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LOC113230 (uncharacterized protein LOC113230)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 113230
Atlas_Id 67784
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 14183821 and ends at 14185874 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC113230  113230  uncharacterized protein LOC113230
Aliases
GeneCards (Weizmann)LOC113230
Ensembl hg19 (Hinxton)ENSG00000141854 [Gene_View]  chr19:14183821-14185874 [Contig_View]  LOC113230 [Vega]
Ensembl hg38 (Hinxton)ENSG00000141854 [Gene_View]  chr19:14183821-14185874 [Contig_View]  LOC113230 [Vega]
ICGC DataPortalENSG00000141854
TCGA cBioPortalLOC113230
AceView (NCBI)LOC113230
Genatlas (Paris)LOC113230
WikiGenes113230
SOURCE (Princeton)LOC113230
Genetics Home Reference (NIH)LOC113230
Genomic and cartography
GoldenPath hg19 (UCSC)LOC113230  -     chr19:14183821-14185874 +  19p13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC113230  -     19p13.12   [Description]    (hg38-Dec_2013)
EnsemblLOC113230 - 19p13.12 [CytoView hg19]  LOC113230 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBILOC113230 [Mapview hg19]  LOC113230 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC000492 BC011002
RefSeq transcript (Entrez)NM_001291291
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)LOC113230
Cluster EST : UnigeneHs.372775 [ NCBI ]
CGAP (NCI)Hs.372775
Alternative Splicing GalleryENSG00000141854
Gene ExpressionLOC113230 [ NCBI-GEO ]   LOC113230 [ EBI - ARRAY_EXPRESS ]   LOC113230 [ SEEK ]   LOC113230 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC113230 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113230
GTEX Portal (Tissue expression)LOC113230
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FF7
Splice isoforms : SwissVarQ96FF7
PhosPhoSitePlusQ96FF7
Domains : Interpro (EBI)AKAP2_C   
Domain families : Pfam (Sanger)AKAP2_C (PF15304)   
Domain families : Pfam (NCBI)pfam15304   
Conserved Domain (NCBI)LOC113230
DMDM Disease mutations113230
Blocks (Seattle)LOC113230
SuperfamilyQ96FF7
Human Protein AtlasENSG00000141854
Peptide AtlasQ96FF7
IPIIPI00061987   
Protein Interaction databases
DIP (DOE-UCLA)Q96FF7
IntAct (EBI)Q96FF7
FunCoupENSG00000141854
BioGRIDLOC113230
STRING (EMBL)LOC113230
ZODIACLOC113230
Ontologies - Pathways
QuickGOQ96FF7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC113230
Atlas of Cancer Signalling NetworkLOC113230
Wikipedia pathwaysLOC113230
Orthology - Evolution
OrthoDB113230
GeneTree (enSembl)ENSG00000141854
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ96FF7
HOGENOMQ96FF7
Homologs : HomoloGeneLOC113230
Homology/Alignments : Family Browser (UCSC)LOC113230
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC113230 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC113230
dbVarLOC113230
ClinVarLOC113230
1000_GenomesLOC113230 
Exome Variant ServerLOC113230
ExAC (Exome Aggregation Consortium)LOC113230 (select the gene name)
Genetic variants : HAPMAP113230
Genomic Variants (DGV)LOC113230 [DGVbeta]
DECIPHER (Syndromes)19:14183821-14185874  ENSG00000141854
CONAN: Copy Number AnalysisLOC113230 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC113230
DgiDB (Drug Gene Interaction Database)LOC113230
DoCM (Curated mutations)LOC113230 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC113230 (select a term)
intoGenLOC113230
Cancer3DLOC113230(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC113230
Genetic Testing Registry LOC113230
NextProtQ96FF7 [Medical]
TSGene113230
GENETestsLOC113230
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease113230
BioCentury BCIQLOC113230
ClinGenLOC113230
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113230
Clinical trialLOC113230
Miscellaneous
canSAR (ICR)LOC113230 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC113230
EVEXLOC113230
GoPubMedLOC113230
iHOPLOC113230
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:24:05 CET 2017

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