Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC149950 (uncharacterized LOC149950)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 149950
Atlas_Id 67810
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 31175281 and ends at 31196694 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC149950  149950  uncharacterized LOC149950
Aliases
GeneCards (Weizmann)LOC149950
Ensembl hg19 (Hinxton)ENSG00000204393 [Gene_View]  chr20:31175281-31196694 [Contig_View]  LOC149950 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204393 [Gene_View]  chr20:31175281-31196694 [Contig_View]  LOC149950 [Vega]
ICGC DataPortalENSG00000204393
TCGA cBioPortalLOC149950
AceView (NCBI)LOC149950
Genatlas (Paris)LOC149950
WikiGenes149950
SOURCE (Princeton)LOC149950
Genetics Home Reference (NIH)LOC149950
Genomic and cartography
GoldenPath hg19 (UCSC)LOC149950  -     chr20:31175281-31196694 +  20q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC149950  -     20q11.21   [Description]    (hg38-Dec_2013)
EnsemblLOC149950 - 20q11.21 [CytoView hg19]  LOC149950 - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBILOC149950 [Mapview hg19]  LOC149950 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC111383 BC130462 BC130464 LN608753
RefSeq transcript (Entrez)NM_001010976
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)LOC149950
Cluster EST : UnigeneHs.516980 [ NCBI ]
CGAP (NCI)Hs.516980
Alternative Splicing GalleryENSG00000204393
Gene ExpressionLOC149950 [ NCBI-GEO ]   LOC149950 [ EBI - ARRAY_EXPRESS ]   LOC149950 [ SEEK ]   LOC149950 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC149950 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149950
GTEX Portal (Tissue expression)LOC149950
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5W150   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5W150  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5W150
Splice isoforms : SwissVarQ5W150
PhosPhoSitePlusQ5W150
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC149950
DMDM Disease mutations149950
Blocks (Seattle)LOC149950
SuperfamilyQ5W150
Human Protein AtlasENSG00000204393
Peptide AtlasQ5W150
HPRD17304
IPIIPI00086068   
Protein Interaction databases
DIP (DOE-UCLA)Q5W150
IntAct (EBI)Q5W150
FunCoupENSG00000204393
BioGRIDLOC149950
STRING (EMBL)LOC149950
ZODIACLOC149950
Ontologies - Pathways
QuickGOQ5W150
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkLOC149950
Atlas of Cancer Signalling NetworkLOC149950
Wikipedia pathwaysLOC149950
Orthology - Evolution
OrthoDB149950
GeneTree (enSembl)ENSG00000204393
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ5W150
HOGENOMQ5W150
Homologs : HomoloGeneLOC149950
Homology/Alignments : Family Browser (UCSC)LOC149950
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC149950 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC149950
dbVarLOC149950
ClinVarLOC149950
1000_GenomesLOC149950 
Exome Variant ServerLOC149950
ExAC (Exome Aggregation Consortium)LOC149950 (select the gene name)
Genetic variants : HAPMAP149950
Genomic Variants (DGV)LOC149950 [DGVbeta]
DECIPHER (Syndromes)20:31175281-31196694  ENSG00000204393
CONAN: Copy Number AnalysisLOC149950 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC149950
DgiDB (Drug Gene Interaction Database)LOC149950
DoCM (Curated mutations)LOC149950 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC149950 (select a term)
intoGenLOC149950
Cancer3DLOC149950(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC149950
Genetic Testing Registry LOC149950
NextProtQ5W150 [Medical]
TSGene149950
GENETestsLOC149950
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease149950
BioCentury BCIQLOC149950
ClinGenLOC149950
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149950
Clinical trialLOC149950
Miscellaneous
canSAR (ICR)LOC149950 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC149950
EVEXLOC149950
GoPubMedLOC149950
iHOPLOC149950
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:24:11 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.