Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC154449 (uncharacterized LOC154449)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 154449
Atlas_Id 67829
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 170254334 and ends at 170262569 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC154449  154449  uncharacterized LOC154449
Aliases
GeneCards (Weizmann)LOC154449
Ensembl hg19 (Hinxton)ENSG00000230960 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230960 [Gene_View]  ENSG00000230960 [Sequence]  chr6:170254334-170262569 [Contig_View]  LOC154449 [Vega]
ICGC DataPortalENSG00000230960
TCGA cBioPortalLOC154449
AceView (NCBI)LOC154449
Genatlas (Paris)LOC154449
WikiGenes154449
SOURCE (Princeton)LOC154449
Genetics Home Reference (NIH)LOC154449
Genomic and cartography
GoldenPath hg38 (UCSC)LOC154449  -     chr6:170254334-170262569 -  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC154449  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblLOC154449 - 6q27 [CytoView hg19]  LOC154449 - 6q27 [CytoView hg38]
Mapping of homologs : NCBILOC154449 [Mapview hg19]  LOC154449 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058183
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC154449
Cluster EST : UnigeneHs.447751 [ NCBI ]
CGAP (NCI)Hs.447751
Alternative Splicing GalleryENSG00000230960
Gene ExpressionLOC154449 [ NCBI-GEO ]   LOC154449 [ EBI - ARRAY_EXPRESS ]   LOC154449 [ SEEK ]   LOC154449 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC154449 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)154449
GTEX Portal (Tissue expression)LOC154449
Human Protein AtlasENSG00000230960-LOC154449 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC154449
DMDM Disease mutations154449
Blocks (Seattle)LOC154449
Human Protein Atlas [tissue]ENSG00000230960-LOC154449 [tissue]
Protein Interaction databases
FunCoupENSG00000230960
BioGRIDLOC154449
STRING (EMBL)LOC154449
ZODIACLOC154449
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease154449
BioCentury BCIQLOC154449
ClinGenLOC154449
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD154449
Clinical trialLOC154449
Miscellaneous
canSAR (ICR)LOC154449 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC154449
EVEXLOC154449
GoPubMedLOC154449
iHOPLOC154449
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:08:34 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.