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LOC162137 (uncharacterized LOC162137)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 162137
Atlas_Id 67843
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 35022136 and ends at 35022907 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC162137  162137  uncharacterized LOC162137
Aliases
GeneCards (Weizmann)LOC162137
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:35022136-35022907 [Contig_View]  LOC162137 [Vega]
TCGA cBioPortalLOC162137
AceView (NCBI)LOC162137
Genatlas (Paris)LOC162137
WikiGenes162137
SOURCE (Princeton)LOC162137
Genetics Home Reference (NIH)LOC162137
Genomic and cartography
GoldenPath hg38 (UCSC)LOC162137  -     chr16:35022136-35022907 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC162137  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblLOC162137 - 16p11.2 [CytoView hg19]  LOC162137 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBILOC162137 [Mapview hg19]  LOC162137 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK312764 BC029861
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC162137
Cluster EST : UnigeneHs.617031 [ NCBI ]
CGAP (NCI)Hs.617031
Gene ExpressionLOC162137 [ NCBI-GEO ]   LOC162137 [ EBI - ARRAY_EXPRESS ]   LOC162137 [ SEEK ]   LOC162137 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC162137 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162137
GTEX Portal (Tissue expression)LOC162137
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6K4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6K4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6K4
Splice isoforms : SwissVarQ8N6K4
PhosPhoSitePlusQ8N6K4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC162137
DMDM Disease mutations162137
Blocks (Seattle)LOC162137
SuperfamilyQ8N6K4
Peptide AtlasQ8N6K4
IPIIPI00167025   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6K4
IntAct (EBI)Q8N6K4
BioGRIDLOC162137
STRING (EMBL)LOC162137
ZODIACLOC162137
Ontologies - Pathways
QuickGOQ8N6K4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC162137
Atlas of Cancer Signalling NetworkLOC162137
Wikipedia pathwaysLOC162137
Orthology - Evolution
OrthoDB162137
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ8N6K4
HOGENOMQ8N6K4
Homologs : HomoloGeneLOC162137
Homology/Alignments : Family Browser (UCSC)LOC162137
Gene fusions - Rearrangements
Fusion: Tumor Portal LOC162137
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC162137 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC162137
dbVarLOC162137
ClinVarLOC162137
1000_GenomesLOC162137 
Exome Variant ServerLOC162137
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP162137
Genomic Variants (DGV)LOC162137 [DGVbeta]
DECIPHERLOC162137 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC162137 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC162137
DgiDB (Drug Gene Interaction Database)LOC162137
DoCM (Curated mutations)LOC162137 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC162137 (select a term)
intoGenLOC162137
Cancer3DLOC162137(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC162137
Genetic Testing Registry LOC162137
NextProtQ8N6K4 [Medical]
TSGene162137
GENETestsLOC162137
Target ValidationLOC162137
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease162137
BioCentury BCIQLOC162137
ClinGenLOC162137
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162137
Clinical trialLOC162137
Miscellaneous
canSAR (ICR)LOC162137 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC162137
EVEXLOC162137
GoPubMedLOC162137
iHOPLOC162137
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:08:57 CET 2017

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