Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC255308 (eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 255308
Atlas_Id 77459
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 10658504 and ends at 10675734 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC255308  255308  eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa pseudogene
Aliases
GeneCards (Weizmann)LOC255308
Ensembl hg19 (Hinxton) [Gene_View]  chr12:10658504-10675734 [Contig_View]  LOC255308 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:10658504-10675734 [Contig_View]  LOC255308 [Vega]
TCGA cBioPortalLOC255308
AceView (NCBI)LOC255308
Genatlas (Paris)LOC255308
WikiGenes255308
SOURCE (Princeton)LOC255308
Genetics Home Reference (NIH)LOC255308
Genomic and cartography
GoldenPath hg19 (UCSC)LOC255308  -     chr12:10658504-10675734 +  12p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC255308  -     12p13.2   [Description]    (hg38-Dec_2013)
EnsemblLOC255308 - 12p13.2 [CytoView hg19]  LOC255308 - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBILOC255308 [Mapview hg19]  LOC255308 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC087847
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000012 NC_018923 NG_003215 NT_009714 NW_004929383
Consensus coding sequences : CCDS (NCBI)LOC255308
Cluster EST : UnigeneHs.547382 [ NCBI ]
CGAP (NCI)Hs.547382
Gene ExpressionLOC255308 [ NCBI-GEO ]   LOC255308 [ EBI - ARRAY_EXPRESS ]   LOC255308 [ SEEK ]   LOC255308 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC255308 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255308
GTEX Portal (Tissue expression)LOC255308
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2VIR3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2VIR3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2VIR3
Splice isoforms : SwissVarQ2VIR3
PhosPhoSitePlusQ2VIR3
Domaine pattern : Prosite (Expaxy)G_TR_2 (PS51722)   
Domains : Interpro (EBI)EF_GTP-bd_dom    P-loop_NTPase    TIF2_gsu_C    Transl_B-barrel    Transl_elong_EF1A/Init_IF2_C    Transl_elong_EFTu/EF1A_2   
Domain families : Pfam (Sanger)eIF2_C (PF09173)    GTP_EFTU (PF00009)    GTP_EFTU_D2 (PF03144)   
Domain families : Pfam (NCBI)pfam09173    pfam00009    pfam03144   
Conserved Domain (NCBI)LOC255308
DMDM Disease mutations255308
Blocks (Seattle)LOC255308
SuperfamilyQ2VIR3
Peptide AtlasQ2VIR3
Protein Interaction databases
DIP (DOE-UCLA)Q2VIR3
IntAct (EBI)Q2VIR3
BioGRIDLOC255308
STRING (EMBL)LOC255308
ZODIACLOC255308
Ontologies - Pathways
QuickGOQ2VIR3
Ontology : AmiGOtranslation initiation factor activity  GTPase activity  GTP binding  translational initiation  
Ontology : EGO-EBItranslation initiation factor activity  GTPase activity  GTP binding  translational initiation  
NDEx NetworkLOC255308
Atlas of Cancer Signalling NetworkLOC255308
Wikipedia pathwaysLOC255308
Orthology - Evolution
OrthoDB255308
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ2VIR3
HOGENOMQ2VIR3
Homologs : HomoloGeneLOC255308
Homology/Alignments : Family Browser (UCSC)LOC255308
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC255308 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC255308
dbVarLOC255308
ClinVarLOC255308
1000_GenomesLOC255308 
Exome Variant ServerLOC255308
ExAC (Exome Aggregation Consortium)LOC255308 (select the gene name)
Genetic variants : HAPMAP255308
Genomic Variants (DGV)LOC255308 [DGVbeta]
DECIPHER (Syndromes)12:10658504-10675734  
CONAN: Copy Number AnalysisLOC255308 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC255308
DgiDB (Drug Gene Interaction Database)LOC255308
DoCM (Curated mutations)LOC255308 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC255308 (select a term)
intoGenLOC255308
Cancer3DLOC255308(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC255308
Genetic Testing Registry LOC255308
NextProtQ2VIR3 [Medical]
TSGene255308
GENETestsLOC255308
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease255308
BioCentury BCIQLOC255308
ClinGenLOC255308
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255308
Clinical trialLOC255308
Miscellaneous
canSAR (ICR)LOC255308 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC255308
EVEXLOC255308
GoPubMedLOC255308
iHOPLOC255308
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:24:22 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.