Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC338963 (epididymal protein pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 338963
Atlas_Id 68034
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 82710471 and ends at 82713993 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC338963  338963  epididymal protein pseudogene
Aliases
GeneCards (Weizmann)LOC338963
Ensembl hg19 (Hinxton)ENSG00000228141 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228141 [Gene_View]  chr15:82710471-82713993 [Contig_View]  LOC338963 [Vega]
ICGC DataPortalENSG00000228141
TCGA cBioPortalLOC338963
AceView (NCBI)LOC338963
Genatlas (Paris)LOC338963
WikiGenes338963
SOURCE (Princeton)LOC338963
Genetics Home Reference (NIH)LOC338963
Genomic and cartography
GoldenPath hg38 (UCSC)LOC338963  -     chr15:82710471-82713993 -  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC338963  -     15q25.2   [Description]    (hg19-Feb_2009)
EnsemblLOC338963 - 15q25.2 [CytoView hg19]  LOC338963 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBILOC338963 [Mapview hg19]  LOC338963 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093496 BC041443
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC338963
Cluster EST : UnigeneHs.254464 [ NCBI ]
CGAP (NCI)Hs.254464
Alternative Splicing GalleryENSG00000228141
Gene ExpressionLOC338963 [ NCBI-GEO ]   LOC338963 [ EBI - ARRAY_EXPRESS ]   LOC338963 [ SEEK ]   LOC338963 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC338963 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)338963
GTEX Portal (Tissue expression)LOC338963
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC338963
DMDM Disease mutations338963
Blocks (Seattle)LOC338963
Human Protein AtlasENSG00000228141
Protein Interaction databases
FunCoupENSG00000228141
BioGRIDLOC338963
STRING (EMBL)LOC338963
ZODIACLOC338963
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease338963
BioCentury BCIQLOC338963
ClinGenLOC338963
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338963
Clinical trialLOC338963
Miscellaneous
canSAR (ICR)LOC338963 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC338963
EVEXLOC338963
GoPubMedLOC338963
iHOPLOC338963
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:22:22 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.