Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC339539 (uncharacterized LOC339539)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 339539
Atlas_Id 68042
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 42857622 and ends at 42888792 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC339539  339539  uncharacterized LOC339539
Aliases
GeneCards (Weizmann)LOC339539
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:42857622-42888792 [Contig_View]  LOC339539 [Vega]
TCGA cBioPortalLOC339539
AceView (NCBI)LOC339539
Genatlas (Paris)LOC339539
WikiGenes339539
SOURCE (Princeton)LOC339539
Genetics Home Reference (NIH)LOC339539
Genomic and cartography
GoldenPath hg38 (UCSC)LOC339539  -     chr1:42857622-42888792 +  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC339539  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblLOC339539 - 1p34.2 [CytoView hg19]  LOC339539 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBILOC339539 [Mapview hg19]  LOC339539 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043541 BC105698
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC339539
Cluster EST : UnigeneHs.434301 [ NCBI ]
CGAP (NCI)Hs.434301
Gene ExpressionLOC339539 [ NCBI-GEO ]   LOC339539 [ EBI - ARRAY_EXPRESS ]   LOC339539 [ SEEK ]   LOC339539 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC339539 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)339539
GTEX Portal (Tissue expression)LOC339539
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC339539
DMDM Disease mutations339539
Blocks (Seattle)LOC339539
Protein Interaction databases
BioGRIDLOC339539
STRING (EMBL)LOC339539
ZODIACLOC339539
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease339539
BioCentury BCIQLOC339539
ClinGenLOC339539
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339539
Clinical trialLOC339539
Miscellaneous
canSAR (ICR)LOC339539 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC339539
EVEXLOC339539
GoPubMedLOC339539
iHOPLOC339539
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:56:30 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.