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LOC344967 (acyl-CoA thioesterase 7 pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 344967
Atlas_Id 51932
Location 4p14  [Link to chromosome band 4p14]
Location_base_pair Starts at 40042917 and ends at 40057199 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC344967  344967  acyl-CoA thioesterase 7 pseudogene
Aliases
GeneCards (Weizmann)LOC344967
Ensembl hg19 (Hinxton)ENSG00000205794 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205794 [Gene_View]  chr4:40042917-40057199 [Contig_View]  LOC344967 [Vega]
ICGC DataPortalENSG00000205794
TCGA cBioPortalLOC344967
AceView (NCBI)LOC344967
Genatlas (Paris)LOC344967
WikiGenes344967
SOURCE (Princeton)LOC344967
Genetics Home Reference (NIH)LOC344967
Genomic and cartography
GoldenPath hg38 (UCSC)LOC344967  -     chr4:40042917-40057199 -  4p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC344967  -     4p14   [Description]    (hg19-Feb_2009)
EnsemblLOC344967 - 4p14 [CytoView hg19]  LOC344967 - 4p14 [CytoView hg38]
Mapping of homologs : NCBILOC344967 [Mapview hg19]  LOC344967 [Mapview hg38]
OMIM611963   
Gene and transcription
Genbank (Entrez)AK125299
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC344967
Cluster EST : UnigeneHs.534633 [ NCBI ]
CGAP (NCI)Hs.534633
Alternative Splicing GalleryENSG00000205794
Gene ExpressionLOC344967 [ NCBI-GEO ]   LOC344967 [ EBI - ARRAY_EXPRESS ]   LOC344967 [ SEEK ]   LOC344967 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC344967 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)344967
GTEX Portal (Tissue expression)LOC344967
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUV0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUV0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUV0
Splice isoforms : SwissVarQ6ZUV0
Catalytic activity : Enzyme3.1.2.2 [ Enzyme-Expasy ]   3.1.2.23.1.2.2 [ IntEnz-EBI ]   3.1.2.2 [ BRENDA ]   3.1.2.2 [ KEGG ]   
PhosPhoSitePlusQ6ZUV0
Domaine pattern : Prosite (Expaxy)HOTDOG_ACOT (PS51770)   
Domains : Interpro (EBI)HOTDOG_ACOT    HotDog_dom    Thioestr_dom   
Domain families : Pfam (Sanger)4HBT (PF03061)   
Domain families : Pfam (NCBI)pfam03061   
Conserved Domain (NCBI)LOC344967
DMDM Disease mutations344967
Blocks (Seattle)LOC344967
SuperfamilyQ6ZUV0
Human Protein AtlasENSG00000205794
Peptide AtlasQ6ZUV0
IPIIPI00445888   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUV0
IntAct (EBI)Q6ZUV0
FunCoupENSG00000205794
BioGRIDLOC344967
STRING (EMBL)LOC344967
ZODIACLOC344967
Ontologies - Pathways
QuickGOQ6ZUV0
Ontology : AmiGOcytosol  palmitoyl-CoA hydrolase activity  long-chain fatty-acyl-CoA biosynthetic process  acyl-CoA hydrolase activity  carboxylic ester hydrolase activity  myristoyl-CoA hydrolase activity  
Ontology : EGO-EBIcytosol  palmitoyl-CoA hydrolase activity  long-chain fatty-acyl-CoA biosynthetic process  acyl-CoA hydrolase activity  carboxylic ester hydrolase activity  myristoyl-CoA hydrolase activity  
NDEx NetworkLOC344967
Atlas of Cancer Signalling NetworkLOC344967
Wikipedia pathwaysLOC344967
Orthology - Evolution
OrthoDB344967
GeneTree (enSembl)ENSG00000205794
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZUV0
HOGENOMQ6ZUV0
Homologs : HomoloGeneLOC344967
Homology/Alignments : Family Browser (UCSC)LOC344967
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC344967 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC344967
dbVarLOC344967
ClinVarLOC344967
1000_GenomesLOC344967 
Exome Variant ServerLOC344967
ExAC (Exome Aggregation Consortium)LOC344967 (select the gene name)
Genetic variants : HAPMAP344967
Genomic Variants (DGV)LOC344967 [DGVbeta]
DECIPHERLOC344967 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC344967 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC344967
DgiDB (Drug Gene Interaction Database)LOC344967
DoCM (Curated mutations)LOC344967 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC344967 (select a term)
intoGenLOC344967
Cancer3DLOC344967(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611963   
Orphanet
MedgenLOC344967
Genetic Testing Registry LOC344967
NextProtQ6ZUV0 [Medical]
TSGene344967
GENETestsLOC344967
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease344967
BioCentury BCIQLOC344967
ClinGenLOC344967
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD344967
Clinical trialLOC344967
Miscellaneous
canSAR (ICR)LOC344967 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC344967
EVEXLOC344967
GoPubMedLOC344967
iHOPLOC344967
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:23:12 CEST 2017

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