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LOC387720 (collagen alpha-1(X) chain)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 387720
Atlas_Id 68073
Location 10q26.2  [Link to chromosome band 10q26]
Location_base_pair Starts at 129532826 and ends at 129535260 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC387720  387720  collagen alpha-1(X) chain
Aliases
GeneCards (Weizmann)LOC387720
Ensembl hg19 (Hinxton)ENSG00000279725 [Gene_View]  chr10:129532826-129535260 [Contig_View]  LOC387720 [Vega]
Ensembl hg38 (Hinxton)ENSG00000279725 [Gene_View]  chr10:129532826-129535260 [Contig_View]  LOC387720 [Vega]
ICGC DataPortalENSG00000279725
TCGA cBioPortalLOC387720
AceView (NCBI)LOC387720
Genatlas (Paris)LOC387720
WikiGenes387720
SOURCE (Princeton)LOC387720
Genetics Home Reference (NIH)LOC387720
Genomic and cartography
GoldenPath hg19 (UCSC)LOC387720  -     chr10:129532826-129535260 -  10q26.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC387720  -     10q26.2   [Description]    (hg38-Dec_2013)
EnsemblLOC387720 - 10q26.2 [CytoView hg19]  LOC387720 - 10q26.2 [CytoView hg38]
Mapping of homologs : NCBILOC387720 [Mapview hg19]  LOC387720 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127642 BC132942 BC132944
RefSeq transcript (Entrez)NM_001013633
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929377
Consensus coding sequences : CCDS (NCBI)LOC387720
Cluster EST : UnigeneHs.527750 [ NCBI ]
CGAP (NCI)Hs.527750
Alternative Splicing GalleryENSG00000279725
Gene ExpressionLOC387720 [ NCBI-GEO ]   LOC387720 [ EBI - ARRAY_EXPRESS ]   LOC387720 [ SEEK ]   LOC387720 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC387720 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)387720
GTEX Portal (Tissue expression)LOC387720
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC387720
DMDM Disease mutations387720
Blocks (Seattle)LOC387720
Human Protein AtlasENSG00000279725
HPRD18373
IPIIPI00418845   
Protein Interaction databases
FunCoupENSG00000279725
BioGRIDLOC387720
STRING (EMBL)LOC387720
ZODIACLOC387720
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease387720
BioCentury BCIQLOC387720
ClinGenLOC387720
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387720
Clinical trialLOC387720
Miscellaneous
canSAR (ICR)LOC387720 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC387720
EVEXLOC387720
GoPubMedLOC387720
iHOPLOC387720
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:25:05 CET 2017

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