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LOC388242 (SAGA complex associated factor 29 pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 388242
Atlas_Id 68076
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29464968 and ends at 29467578 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC388242  388242  SAGA complex associated factor 29 pseudogene
Aliases
GeneCards (Weizmann)LOC388242
Ensembl hg19 (Hinxton)ENSG00000258150 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258150 [Gene_View]  chr16:29464968-29467578 [Contig_View]  LOC388242 [Vega]
ICGC DataPortalENSG00000258150
TCGA cBioPortalLOC388242
AceView (NCBI)LOC388242
Genatlas (Paris)LOC388242
WikiGenes388242
SOURCE (Princeton)LOC388242
Genetics Home Reference (NIH)LOC388242
Genomic and cartography
GoldenPath hg38 (UCSC)LOC388242  -     chr16:29464968-29467578 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC388242  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblLOC388242 - 16p11.2 [CytoView hg19]  LOC388242 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBILOC388242 [Mapview hg19]  LOC388242 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CA419139
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC388242
Cluster EST : UnigeneHs.662549 [ NCBI ]
CGAP (NCI)Hs.662549
Alternative Splicing GalleryENSG00000258150
Gene ExpressionLOC388242 [ NCBI-GEO ]   LOC388242 [ EBI - ARRAY_EXPRESS ]   LOC388242 [ SEEK ]   LOC388242 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC388242 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)388242
GTEX Portal (Tissue expression)LOC388242
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC388242
DMDM Disease mutations388242
Blocks (Seattle)LOC388242
Human Protein AtlasENSG00000258150
Protein Interaction databases
FunCoupENSG00000258150
BioGRIDLOC388242
STRING (EMBL)LOC388242
ZODIACLOC388242
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease388242
BioCentury BCIQLOC388242
ClinGenLOC388242
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388242
Clinical trialLOC388242
Miscellaneous
canSAR (ICR)LOC388242 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC388242
EVEXLOC388242
GoPubMedLOC388242
iHOPLOC388242
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:22:33 CEST 2017

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