Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC388692 (uncharacterized LOC388692)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 388692
Atlas_Id 68082
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 143793719 and ends at 143797107 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC388692  388692  uncharacterized LOC388692
Aliases
GeneCards (Weizmann)LOC388692
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:143793719-143797107 [Contig_View]  LOC388692 [Vega]
TCGA cBioPortalLOC388692
AceView (NCBI)LOC388692
Genatlas (Paris)LOC388692
WikiGenes388692
SOURCE (Princeton)LOC388692
Genetics Home Reference (NIH)LOC388692
Genomic and cartography
GoldenPath hg38 (UCSC)LOC388692  -     chr1:143793719-143797107 +  1q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC388692  -     1q21.1   [Description]    (hg19-Feb_2009)
EnsemblLOC388692 - 1q21.1 [CytoView hg19]  LOC388692 - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBILOC388692 [Mapview hg19]  LOC388692 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC127704
RefSeq transcript (Entrez)NM_001013644
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC388692
Cluster EST : UnigeneHs.271249 [ NCBI ]
CGAP (NCI)Hs.271249
Gene ExpressionLOC388692 [ NCBI-GEO ]   LOC388692 [ EBI - ARRAY_EXPRESS ]   LOC388692 [ SEEK ]   LOC388692 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC388692 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388692
GTEX Portal (Tissue expression)LOC388692
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZW35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZW35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZW35
Splice isoforms : SwissVarQ6ZW35
PhosPhoSitePlusQ6ZW35
Domains : Interpro (EBI)DUF4741   
Domain families : Pfam (Sanger)DUF4741 (PF15897)   
Domain families : Pfam (NCBI)pfam15897   
Conserved Domain (NCBI)LOC388692
DMDM Disease mutations388692
Blocks (Seattle)LOC388692
SuperfamilyQ6ZW35
Peptide AtlasQ6ZW35
HPRD18386
IPIIPI00419154   IPI00446229   IPI00983856   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZW35
IntAct (EBI)Q6ZW35
BioGRIDLOC388692
STRING (EMBL)LOC388692
ZODIACLOC388692
Ontologies - Pathways
QuickGOQ6ZW35
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC388692
Atlas of Cancer Signalling NetworkLOC388692
Wikipedia pathwaysLOC388692
Orthology - Evolution
OrthoDB388692
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZW35
HOGENOMQ6ZW35
Homologs : HomoloGeneLOC388692
Homology/Alignments : Family Browser (UCSC)LOC388692
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC388692 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC388692
dbVarLOC388692
ClinVarLOC388692
1000_GenomesLOC388692 
Exome Variant ServerLOC388692
ExAC (Exome Aggregation Consortium)LOC388692 (select the gene name)
Genetic variants : HAPMAP388692
Genomic Variants (DGV)LOC388692 [DGVbeta]
DECIPHERLOC388692 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC388692 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC388692
DgiDB (Drug Gene Interaction Database)LOC388692
DoCM (Curated mutations)LOC388692 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC388692 (select a term)
intoGenLOC388692
Cancer3DLOC388692(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC388692
Genetic Testing Registry LOC388692
NextProtQ6ZW35 [Medical]
TSGene388692
GENETestsLOC388692
Target ValidationLOC388692
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease388692
BioCentury BCIQLOC388692
ClinGenLOC388692
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388692
Clinical trialLOC388692
Miscellaneous
canSAR (ICR)LOC388692 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC388692
EVEXLOC388692
GoPubMedLOC388692
iHOPLOC388692
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:22:35 CEST 2017

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