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LOC388882 (uncharacterized LOC388882)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 388882
Atlas_Id 68087
Location 22q11.23  [Link to chromosome band 22q11]
Location_base_pair Starts at 23804269 and ends at 23829167 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC388882  388882  uncharacterized LOC388882
Aliases
GeneCards (Weizmann)LOC388882
Ensembl hg19 (Hinxton)ENSG00000178248 [Gene_View]  chr22:23804269-23829167 [Contig_View]  LOC388882 [Vega]
Ensembl hg38 (Hinxton)ENSG00000178248 [Gene_View]  chr22:23804269-23829167 [Contig_View]  LOC388882 [Vega]
ICGC DataPortalENSG00000178248
TCGA cBioPortalLOC388882
AceView (NCBI)LOC388882
Genatlas (Paris)LOC388882
WikiGenes388882
SOURCE (Princeton)LOC388882
Genetics Home Reference (NIH)LOC388882
Genomic and cartography
GoldenPath hg19 (UCSC)LOC388882  -     chr22:23804269-23829167 -  22q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC388882  -     22q11.23   [Description]    (hg38-Dec_2013)
EnsemblLOC388882 - 22q11.23 [CytoView hg19]  LOC388882 - 22q11.23 [CytoView hg38]
Mapping of homologs : NCBILOC388882 [Mapview hg19]  LOC388882 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA868867 BC036910 HG512075
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NT_187632 NW_004929430
Consensus coding sequences : CCDS (NCBI)LOC388882
Cluster EST : UnigeneHs.542766 [ NCBI ]
CGAP (NCI)Hs.542766
Alternative Splicing GalleryENSG00000178248
Gene ExpressionLOC388882 [ NCBI-GEO ]   LOC388882 [ EBI - ARRAY_EXPRESS ]   LOC388882 [ SEEK ]   LOC388882 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC388882 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388882
GTEX Portal (Tissue expression)LOC388882
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N402   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N402  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N402
Splice isoforms : SwissVarQ8N402
PhosPhoSitePlusQ8N402
Domains : Interpro (EBI)Ret-finger_pr-like_3_antisense   
Domain families : Pfam (Sanger)RFPL3_antisense (PF10489)   
Domain families : Pfam (NCBI)pfam10489   
Conserved Domain (NCBI)LOC388882
DMDM Disease mutations388882
Blocks (Seattle)LOC388882
SuperfamilyQ8N402
Human Protein AtlasENSG00000178248
Peptide AtlasQ8N402
HPRD14207
IPIIPI00166586   
Protein Interaction databases
DIP (DOE-UCLA)Q8N402
IntAct (EBI)Q8N402
FunCoupENSG00000178248
BioGRIDLOC388882
STRING (EMBL)LOC388882
ZODIACLOC388882
Ontologies - Pathways
QuickGOQ8N402
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC388882
Atlas of Cancer Signalling NetworkLOC388882
Wikipedia pathwaysLOC388882
Orthology - Evolution
OrthoDB388882
GeneTree (enSembl)ENSG00000178248
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ8N402
HOGENOMQ8N402
Homologs : HomoloGeneLOC388882
Homology/Alignments : Family Browser (UCSC)LOC388882
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC388882 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC388882
dbVarLOC388882
ClinVarLOC388882
1000_GenomesLOC388882 
Exome Variant ServerLOC388882
ExAC (Exome Aggregation Consortium)LOC388882 (select the gene name)
Genetic variants : HAPMAP388882
Genomic Variants (DGV)LOC388882 [DGVbeta]
DECIPHER (Syndromes)22:23804269-23829167  ENSG00000178248
CONAN: Copy Number AnalysisLOC388882 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC388882
DgiDB (Drug Gene Interaction Database)LOC388882
DoCM (Curated mutations)LOC388882 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC388882 (select a term)
intoGenLOC388882
Cancer3DLOC388882(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC388882
Genetic Testing Registry LOC388882
NextProtQ8N402 [Medical]
TSGene388882
GENETestsLOC388882
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease388882
BioCentury BCIQLOC388882
ClinGenLOC388882
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388882
Clinical trialLOC388882
Miscellaneous
canSAR (ICR)LOC388882 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC388882
EVEXLOC388882
GoPubMedLOC388882
iHOPLOC388882
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:25:08 CET 2017

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