Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC389895 (chromosome 16 open reading frame 72-like)

Identity

Alias (NCBI)-
HGNC (Hugo) -
LocusID (NCBI) 389895
Atlas_Id 68100
Location Xq27.1  [Link to chromosome band Xq27]
Location_base_pair Starts at 140091667 and ends at 140092911 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC389895    chromosome 16 open reading frame 72-like
Aliases
GeneCards (Weizmann)LOC389895
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chrX:140091667-140092911 [Contig_View]  LOC389895 [Vega]
TCGA cBioPortalLOC389895
AceView (NCBI)LOC389895
Genatlas (Paris)LOC389895
SOURCE (Princeton)LOC389895
Genetics Home Reference (NIH)LOC389895
Genomic and cartography
GoldenPath hg38 (UCSC)LOC389895  -     chrX:140091667-140092911 +  Xq27.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC389895  -     Xq27.1   [Description]    (hg19-Feb_2009)
GoldenPathLOC389895 - Xq27.1 [CytoView hg19]  LOC389895 - Xq27.1 [CytoView hg38]
Genome Data Viewer NCBILOC389895 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA608813 AA865737 AW006167 BM701778
RefSeq transcript (Entrez)NM_001271560
Consensus coding sequences : CCDS (NCBI)LOC389895
Gene ExpressionLOC389895 [ NCBI-GEO ]   LOC389895 [ EBI - ARRAY_EXPRESS ]   LOC389895 [ SEEK ]   LOC389895 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC389895 [ Firebrowse - Broad ]
GenevisibleExpression of LOC389895 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389895
GTEX Portal (Tissue expression)LOC389895
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC389895
Protein Interaction databases
BioGRIDLOC389895
STRING (EMBL)LOC389895
ZODIACLOC389895
Ontologies - Pathways
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLOC389895
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Jan 16 19:08:42 CET 2022

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