Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC390705 (protein phosphatase 2 regulatory subunit B'', beta pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 390705
Atlas_Id 68103
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 32289547 and ends at 32289981 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC390705  390705  protein phosphatase 2 regulatory subunit B'', beta pseudogene
Aliases
GeneCards (Weizmann)LOC390705
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:32289547-32289981 [Contig_View]  LOC390705 [Vega]
TCGA cBioPortalLOC390705
AceView (NCBI)LOC390705
Genatlas (Paris)LOC390705
WikiGenes390705
SOURCE (Princeton)LOC390705
Genetics Home Reference (NIH)LOC390705
Genomic and cartography
GoldenPath hg38 (UCSC)LOC390705  -     chr16:32289547-32289981 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC390705  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblLOC390705 - 16p11.2 [CytoView hg19]  LOC390705 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBILOC390705 [Mapview hg19]  LOC390705 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA709247 BC041879 DB525678
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC390705
Cluster EST : UnigeneHs.745226 [ NCBI ]
CGAP (NCI)Hs.745226
Gene ExpressionLOC390705 [ NCBI-GEO ]   LOC390705 [ EBI - ARRAY_EXPRESS ]   LOC390705 [ SEEK ]   LOC390705 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC390705 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)390705
GTEX Portal (Tissue expression)LOC390705
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC390705
DMDM Disease mutations390705
Blocks (Seattle)LOC390705
IPIIPI00739472   
Protein Interaction databases
BioGRIDLOC390705
STRING (EMBL)LOC390705
ZODIACLOC390705
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease390705
BioCentury BCIQLOC390705
ClinGenLOC390705
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390705
Clinical trialLOC390705
Miscellaneous
canSAR (ICR)LOC390705 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC390705
EVEXLOC390705
GoPubMedLOC390705
iHOPLOC390705
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:09:49 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.