Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC392232 (transient receptor potential cation channel subfamily A member 1 pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 392232
Atlas_Id 68108
Location 8q21.11  [Link to chromosome band 8q21]
Location_base_pair Starts at 72202752 and ends at 72251634 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC392232  392232  transient receptor potential cation channel subfamily A member 1 pseudogene
Aliases
GeneCards (Weizmann)LOC392232
Ensembl hg19 (Hinxton)ENSG00000250979 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250979 [Gene_View]  chr8:72202752-72251634 [Contig_View]  LOC392232 [Vega]
ICGC DataPortalENSG00000250979
TCGA cBioPortalLOC392232
AceView (NCBI)LOC392232
Genatlas (Paris)LOC392232
WikiGenes392232
SOURCE (Princeton)LOC392232
Genetics Home Reference (NIH)LOC392232
Genomic and cartography
GoldenPath hg38 (UCSC)LOC392232  -     chr8:72202752-72251634 -  8q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC392232  -     8q21.11   [Description]    (hg19-Feb_2009)
EnsemblLOC392232 - 8q21.11 [CytoView hg19]  LOC392232 - 8q21.11 [CytoView hg38]
Mapping of homologs : NCBILOC392232 [Mapview hg19]  LOC392232 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK309726
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC392232
Cluster EST : UnigeneHs.454043 [ NCBI ]
CGAP (NCI)Hs.454043
Alternative Splicing GalleryENSG00000250979
Gene ExpressionLOC392232 [ NCBI-GEO ]   LOC392232 [ EBI - ARRAY_EXPRESS ]   LOC392232 [ SEEK ]   LOC392232 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC392232 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)392232
GTEX Portal (Tissue expression)LOC392232
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC392232
DMDM Disease mutations392232
Blocks (Seattle)LOC392232
Human Protein AtlasENSG00000250979
IPIIPI00921299   
Protein Interaction databases
FunCoupENSG00000250979
BioGRIDLOC392232
STRING (EMBL)LOC392232
ZODIACLOC392232
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease392232
BioCentury BCIQLOC392232
ClinGenLOC392232
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD392232
Clinical trialLOC392232
Miscellaneous
canSAR (ICR)LOC392232 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC392232
EVEXLOC392232
GoPubMedLOC392232
iHOPLOC392232
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:22:41 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.