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LOC392364 (nuclear pore associated protein 1 pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 392364
Atlas_Id 68109
Location 9q22.1  [Link to chromosome band 9q22]
Location_base_pair Starts at 87858043 and ends at 87859056 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC392364  392364  nuclear pore associated protein 1 pseudogene
Aliases
GeneCards (Weizmann)LOC392364
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:87858043-87859056 [Contig_View]  LOC392364 [Vega]
TCGA cBioPortalLOC392364
AceView (NCBI)LOC392364
Genatlas (Paris)LOC392364
WikiGenes392364
SOURCE (Princeton)LOC392364
Genetics Home Reference (NIH)LOC392364
Genomic and cartography
GoldenPath hg38 (UCSC)LOC392364  -     chr9:87858043-87859056 -  9q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC392364  -     9q22.1   [Description]    (hg19-Feb_2009)
EnsemblLOC392364 - 9q22.1 [CytoView hg19]  LOC392364 - 9q22.1 [CytoView hg38]
Mapping of homologs : NCBILOC392364 [Mapview hg19]  LOC392364 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC086877
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC392364
Cluster EST : UnigeneHs.742401 [ NCBI ]
CGAP (NCI)Hs.742401
Gene ExpressionLOC392364 [ NCBI-GEO ]   LOC392364 [ EBI - ARRAY_EXPRESS ]   LOC392364 [ SEEK ]   LOC392364 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC392364 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)392364
GTEX Portal (Tissue expression)LOC392364
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5PR19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5PR19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5PR19
Splice isoforms : SwissVarQ5PR19
PhosPhoSitePlusQ5PR19
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC392364
DMDM Disease mutations392364
Blocks (Seattle)LOC392364
SuperfamilyQ5PR19
Peptide AtlasQ5PR19
IPIIPI00784524   
Protein Interaction databases
DIP (DOE-UCLA)Q5PR19
IntAct (EBI)Q5PR19
BioGRIDLOC392364
STRING (EMBL)LOC392364
ZODIACLOC392364
Ontologies - Pathways
QuickGOQ5PR19
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC392364
Atlas of Cancer Signalling NetworkLOC392364
Wikipedia pathwaysLOC392364
Orthology - Evolution
OrthoDB392364
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ5PR19
HOGENOMQ5PR19
Homologs : HomoloGeneLOC392364
Homology/Alignments : Family Browser (UCSC)LOC392364
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC392364 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC392364
dbVarLOC392364
ClinVarLOC392364
1000_GenomesLOC392364 
Exome Variant ServerLOC392364
ExAC (Exome Aggregation Consortium)LOC392364 (select the gene name)
Genetic variants : HAPMAP392364
Genomic Variants (DGV)LOC392364 [DGVbeta]
DECIPHERLOC392364 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC392364 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC392364
DgiDB (Drug Gene Interaction Database)LOC392364
DoCM (Curated mutations)LOC392364 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC392364 (select a term)
intoGenLOC392364
Cancer3DLOC392364(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC392364
Genetic Testing Registry LOC392364
NextProtQ5PR19 [Medical]
TSGene392364
GENETestsLOC392364
Target ValidationLOC392364
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease392364
BioCentury BCIQLOC392364
ClinGenLOC392364
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD392364
Clinical trialLOC392364
Miscellaneous
canSAR (ICR)LOC392364 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC392364
EVEXLOC392364
GoPubMedLOC392364
iHOPLOC392364
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:22:41 CEST 2017

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