Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC399815 (chromosome 10 open reading frame 88 pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 399815
Atlas_Id 68113
Location 10q26.13  [Link to chromosome band 10q26]
Location_base_pair Starts at 122879633 and ends at 122898714 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC399815  399815  chromosome 10 open reading frame 88 pseudogene
Aliases
GeneCards (Weizmann)LOC399815
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:122879633-122898714 [Contig_View]  LOC399815 [Vega]
TCGA cBioPortalLOC399815
AceView (NCBI)LOC399815
Genatlas (Paris)LOC399815
WikiGenes399815
SOURCE (Princeton)LOC399815
Genetics Home Reference (NIH)LOC399815
Genomic and cartography
GoldenPath hg38 (UCSC)LOC399815  -     chr10:122879633-122898714 +  10q26.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC399815  -     10q26.13   [Description]    (hg19-Feb_2009)
EnsemblLOC399815 - 10q26.13 [CytoView hg19]  LOC399815 - 10q26.13 [CytoView hg38]
Mapping of homologs : NCBILOC399815 [Mapview hg19]  LOC399815 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK300776 BC053499 DA816061 DY654994
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC399815
Cluster EST : UnigeneHs.736444 [ NCBI ]
CGAP (NCI)Hs.736444
Gene ExpressionLOC399815 [ NCBI-GEO ]   LOC399815 [ EBI - ARRAY_EXPRESS ]   LOC399815 [ SEEK ]   LOC399815 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC399815 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399815
GTEX Portal (Tissue expression)LOC399815
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ499Y3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ499Y3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ499Y3
Splice isoforms : SwissVarQ499Y3
PhosPhoSitePlusQ499Y3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC399815
DMDM Disease mutations399815
Blocks (Seattle)LOC399815
SuperfamilyQ499Y3
Peptide AtlasQ499Y3
IPIIPI00400926   
Protein Interaction databases
DIP (DOE-UCLA)Q499Y3
IntAct (EBI)Q499Y3
BioGRIDLOC399815
STRING (EMBL)LOC399815
ZODIACLOC399815
Ontologies - Pathways
QuickGOQ499Y3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC399815
Atlas of Cancer Signalling NetworkLOC399815
Wikipedia pathwaysLOC399815
Orthology - Evolution
OrthoDB399815
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ499Y3
HOGENOMQ499Y3
Homologs : HomoloGeneLOC399815
Homology/Alignments : Family Browser (UCSC)LOC399815
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC399815 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC399815
dbVarLOC399815
ClinVarLOC399815
1000_GenomesLOC399815 
Exome Variant ServerLOC399815
ExAC (Exome Aggregation Consortium)LOC399815 (select the gene name)
Genetic variants : HAPMAP399815
Genomic Variants (DGV)LOC399815 [DGVbeta]
DECIPHERLOC399815 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC399815 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC399815
DgiDB (Drug Gene Interaction Database)LOC399815
DoCM (Curated mutations)LOC399815 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC399815 (select a term)
intoGenLOC399815
Cancer3DLOC399815(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC399815
Genetic Testing Registry LOC399815
NextProtQ499Y3 [Medical]
TSGene399815
GENETestsLOC399815
Target ValidationLOC399815
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease399815
BioCentury BCIQLOC399815
ClinGenLOC399815
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399815
Clinical trialLOC399815
Miscellaneous
canSAR (ICR)LOC399815 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC399815
EVEXLOC399815
GoPubMedLOC399815
iHOPLOC399815
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:22:42 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.