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LOC400499 (vitellogenin)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 400499
Atlas_Id 68122
Location 16p13.13  [Link to chromosome band 16p13]
Location_base_pair Starts at 11442191 and ends at 11491755 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC400499  400499  vitellogenin
Aliases
GeneCards (Weizmann)LOC400499
Ensembl hg19 (Hinxton)ENSG00000188897 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188897 [Gene_View]  chr16:11442191-11491755 [Contig_View]  LOC400499 [Vega]
ICGC DataPortalENSG00000188897
TCGA cBioPortalLOC400499
AceView (NCBI)LOC400499
Genatlas (Paris)LOC400499
WikiGenes400499
SOURCE (Princeton)LOC400499
Genetics Home Reference (NIH)LOC400499
Genomic and cartography
GoldenPath hg38 (UCSC)LOC400499  -     chr16:11442191-11491755 -  16p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC400499  -     16p13.13   [Description]    (hg19-Feb_2009)
EnsemblLOC400499 - 16p13.13 [CytoView hg19]  LOC400499 - 16p13.13 [CytoView hg38]
Mapping of homologs : NCBILOC400499 [Mapview hg19]  LOC400499 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126539
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC400499
Cluster EST : UnigeneHs.459937 [ NCBI ]
CGAP (NCI)Hs.459937
Alternative Splicing GalleryENSG00000188897
Gene ExpressionLOC400499 [ NCBI-GEO ]   LOC400499 [ EBI - ARRAY_EXPRESS ]   LOC400499 [ SEEK ]   LOC400499 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC400499 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400499
GTEX Portal (Tissue expression)LOC400499
Human Protein AtlasENSG00000188897-LOC400499 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZTK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZTK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZTK2
Splice isoforms : SwissVarQ6ZTK2
PhosPhoSitePlusQ6ZTK2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC400499
DMDM Disease mutations400499
Blocks (Seattle)LOC400499
SuperfamilyQ6ZTK2
Human Protein Atlas [tissue]ENSG00000188897-LOC400499 [tissue]
Peptide AtlasQ6ZTK2
HPRD18414
IPIIPI00418963   IPI01025280   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZTK2
IntAct (EBI)Q6ZTK2
FunCoupENSG00000188897
BioGRIDLOC400499
STRING (EMBL)LOC400499
ZODIACLOC400499
Ontologies - Pathways
QuickGOQ6ZTK2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC400499
Atlas of Cancer Signalling NetworkLOC400499
Wikipedia pathwaysLOC400499
Orthology - Evolution
OrthoDB400499
GeneTree (enSembl)ENSG00000188897
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZTK2
HOGENOMQ6ZTK2
Homologs : HomoloGeneLOC400499
Homology/Alignments : Family Browser (UCSC)LOC400499
Gene fusions - Rearrangements
Tumor Fusion PortalLOC400499
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC400499 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC400499
dbVarLOC400499
ClinVarLOC400499
1000_GenomesLOC400499 
Exome Variant ServerLOC400499
ExAC (Exome Aggregation Consortium)ENSG00000188897
GNOMAD BrowserENSG00000188897
Genetic variants : HAPMAP400499
Genomic Variants (DGV)LOC400499 [DGVbeta]
DECIPHERLOC400499 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC400499 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC400499
DgiDB (Drug Gene Interaction Database)LOC400499
DoCM (Curated mutations)LOC400499 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC400499 (select a term)
intoGenLOC400499
Cancer3DLOC400499(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLOC400499
MedgenLOC400499
Genetic Testing Registry LOC400499
NextProtQ6ZTK2 [Medical]
TSGene400499
GENETestsLOC400499
Target ValidationLOC400499
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease400499
BioCentury BCIQLOC400499
ClinGenLOC400499
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400499
Clinical trialLOC400499
Miscellaneous
canSAR (ICR)LOC400499 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC400499
EVEXLOC400499
GoPubMedLOC400499
iHOPLOC400499
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:56:48 CET 2017

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