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LOC400576 (uncharacterized LOC400576)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 400576
Atlas_Id 68128
Location 17p12  [Link to chromosome band 17p12]
Location_base_pair Starts at 14767583 and ends at 14780203 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC400576  400576  uncharacterized LOC400576
Aliases
GeneCards (Weizmann)LOC400576
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:14767583-14780203 [Contig_View]  LOC400576 [Vega]
TCGA cBioPortalLOC400576
AceView (NCBI)LOC400576
Genatlas (Paris)LOC400576
WikiGenes400576
SOURCE (Princeton)LOC400576
Genetics Home Reference (NIH)LOC400576
Genomic and cartography
GoldenPath hg38 (UCSC)LOC400576  -     chr17:14767583-14780203 -  17p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC400576  -     17p12   [Description]    (hg19-Feb_2009)
EnsemblLOC400576 - 17p12 [CytoView hg19]  LOC400576 - 17p12 [CytoView hg38]
Mapping of homologs : NCBILOC400576 [Mapview hg19]  LOC400576 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127731
RefSeq transcript (Entrez)NM_001001684
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC400576
Cluster EST : UnigeneHs.446616 [ NCBI ]
CGAP (NCI)Hs.446616
Gene ExpressionLOC400576 [ NCBI-GEO ]   LOC400576 [ EBI - ARRAY_EXPRESS ]   LOC400576 [ SEEK ]   LOC400576 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC400576 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400576
GTEX Portal (Tissue expression)LOC400576
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZS49   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZS49  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZS49
Splice isoforms : SwissVarQ6ZS49
PhosPhoSitePlusQ6ZS49
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC400576
DMDM Disease mutations400576
Blocks (Seattle)LOC400576
SuperfamilyQ6ZS49
Peptide AtlasQ6ZS49
HPRD13514
IPIIPI00401934   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZS49
IntAct (EBI)Q6ZS49
BioGRIDLOC400576
STRING (EMBL)LOC400576
ZODIACLOC400576
Ontologies - Pathways
QuickGOQ6ZS49
Ontology : AmiGOextracellular space  
Ontology : EGO-EBIextracellular space  
NDEx NetworkLOC400576
Atlas of Cancer Signalling NetworkLOC400576
Wikipedia pathwaysLOC400576
Orthology - Evolution
OrthoDB400576
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZS49
HOGENOMQ6ZS49
Homologs : HomoloGeneLOC400576
Homology/Alignments : Family Browser (UCSC)LOC400576
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC400576 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC400576
dbVarLOC400576
ClinVarLOC400576
1000_GenomesLOC400576 
Exome Variant ServerLOC400576
ExAC (Exome Aggregation Consortium)LOC400576 (select the gene name)
Genetic variants : HAPMAP400576
Genomic Variants (DGV)LOC400576 [DGVbeta]
DECIPHERLOC400576 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC400576 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC400576
DgiDB (Drug Gene Interaction Database)LOC400576
DoCM (Curated mutations)LOC400576 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC400576 (select a term)
intoGenLOC400576
Cancer3DLOC400576(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC400576
Genetic Testing Registry LOC400576
NextProtQ6ZS49 [Medical]
TSGene400576
GENETestsLOC400576
Target ValidationLOC400576
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease400576
BioCentury BCIQLOC400576
ClinGenLOC400576
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400576
Clinical trialLOC400576
Miscellaneous
canSAR (ICR)LOC400576 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC400576
EVEXLOC400576
GoPubMedLOC400576
iHOPLOC400576
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:25:14 CEST 2017

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