Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC400661 (uncharacterized LOC400661)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 400661
Atlas_Id 68134
Location 18q23  [Link to chromosome band 18q23]
Location_base_pair Starts at 74401986 and ends at 74405592 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC400661  400661  uncharacterized LOC400661
Aliases
GeneCards (Weizmann)LOC400661
Ensembl hg19 (Hinxton)ENSG00000276397 [Gene_View]  chr18:74401986-74405592 [Contig_View]  LOC400661 [Vega]
Ensembl hg38 (Hinxton)ENSG00000276397 [Gene_View]  chr18:74401986-74405592 [Contig_View]  LOC400661 [Vega]
ICGC DataPortalENSG00000276397
TCGA cBioPortalLOC400661
AceView (NCBI)LOC400661
Genatlas (Paris)LOC400661
WikiGenes400661
SOURCE (Princeton)LOC400661
Genetics Home Reference (NIH)LOC400661
Genomic and cartography
GoldenPath hg19 (UCSC)LOC400661  -     chr18:74401986-74405592 +  18q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC400661  -     18q23   [Description]    (hg38-Dec_2013)
EnsemblLOC400661 - 18q23 [CytoView hg19]  LOC400661 - 18q23 [CytoView hg38]
Mapping of homologs : NCBILOC400661 [Mapview hg19]  LOC400661 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126829 BC119774 BC119776 HG510159
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_004929411
Consensus coding sequences : CCDS (NCBI)LOC400661
Cluster EST : UnigeneHs.514963 [ NCBI ]
CGAP (NCI)Hs.514963
Alternative Splicing GalleryENSG00000276397
Gene ExpressionLOC400661 [ NCBI-GEO ]   LOC400661 [ EBI - ARRAY_EXPRESS ]   LOC400661 [ SEEK ]   LOC400661 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC400661 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400661
GTEX Portal (Tissue expression)LOC400661
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZT83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZT83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZT83
Splice isoforms : SwissVarQ6ZT83
PhosPhoSitePlusQ6ZT83
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC400661
DMDM Disease mutations400661
Blocks (Seattle)LOC400661
SuperfamilyQ6ZT83
Human Protein AtlasENSG00000276397
Peptide AtlasQ6ZT83
HPRD13497
IPIIPI00401976   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZT83
IntAct (EBI)Q6ZT83
FunCoupENSG00000276397
BioGRIDLOC400661
STRING (EMBL)LOC400661
ZODIACLOC400661
Ontologies - Pathways
QuickGOQ6ZT83
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC400661
Atlas of Cancer Signalling NetworkLOC400661
Wikipedia pathwaysLOC400661
Orthology - Evolution
OrthoDB400661
GeneTree (enSembl)ENSG00000276397
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZT83
HOGENOMQ6ZT83
Homologs : HomoloGeneLOC400661
Homology/Alignments : Family Browser (UCSC)LOC400661
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC400661 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC400661
dbVarLOC400661
ClinVarLOC400661
1000_GenomesLOC400661 
Exome Variant ServerLOC400661
ExAC (Exome Aggregation Consortium)LOC400661 (select the gene name)
Genetic variants : HAPMAP400661
Genomic Variants (DGV)LOC400661 [DGVbeta]
DECIPHER (Syndromes)18:74401986-74405592  ENSG00000276397
CONAN: Copy Number AnalysisLOC400661 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC400661
DgiDB (Drug Gene Interaction Database)LOC400661
DoCM (Curated mutations)LOC400661 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC400661 (select a term)
intoGenLOC400661
Cancer3DLOC400661(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC400661
Genetic Testing Registry LOC400661
NextProtQ6ZT83 [Medical]
TSGene400661
GENETestsLOC400661
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease400661
BioCentury BCIQLOC400661
ClinGenLOC400661
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400661
Clinical trialLOC400661
Miscellaneous
canSAR (ICR)LOC400661 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC400661
EVEXLOC400661
GoPubMedLOC400661
iHOPLOC400661
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:25:19 CET 2017

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