Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC400692 (uncharacterized LOC400692)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 400692
Atlas_Id 68139
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 37545470 and ends at 37549171 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC400692  400692  uncharacterized LOC400692
Aliases
GeneCards (Weizmann)LOC400692
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:37545470-37549171 [Contig_View]  LOC400692 [Vega]
TCGA cBioPortalLOC400692
AceView (NCBI)LOC400692
Genatlas (Paris)LOC400692
WikiGenes400692
SOURCE (Princeton)LOC400692
Genetics Home Reference (NIH)LOC400692
Genomic and cartography
GoldenPath hg38 (UCSC)LOC400692  -     chr19:37545470-37549171 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC400692  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblLOC400692 - 19q13.12 [CytoView hg19]  LOC400692 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBILOC400692 [Mapview hg19]  LOC400692 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL831916
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC400692
Cluster EST : UnigeneHs.590968 [ NCBI ]
CGAP (NCI)Hs.590968
Gene ExpressionLOC400692 [ NCBI-GEO ]   LOC400692 [ EBI - ARRAY_EXPRESS ]   LOC400692 [ SEEK ]   LOC400692 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC400692 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400692
GTEX Portal (Tissue expression)LOC400692
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N3U1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N3U1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N3U1
Splice isoforms : SwissVarQ8N3U1
PhosPhoSitePlusQ8N3U1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC400692
DMDM Disease mutations400692
Blocks (Seattle)LOC400692
SuperfamilyQ8N3U1
Peptide AtlasQ8N3U1
IPIIPI00166627   
Protein Interaction databases
DIP (DOE-UCLA)Q8N3U1
IntAct (EBI)Q8N3U1
BioGRIDLOC400692
STRING (EMBL)LOC400692
ZODIACLOC400692
Ontologies - Pathways
QuickGOQ8N3U1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC400692
Atlas of Cancer Signalling NetworkLOC400692
Wikipedia pathwaysLOC400692
Orthology - Evolution
OrthoDB400692
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ8N3U1
HOGENOMQ8N3U1
Homologs : HomoloGeneLOC400692
Homology/Alignments : Family Browser (UCSC)LOC400692
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC400692 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC400692
dbVarLOC400692
ClinVarLOC400692
1000_GenomesLOC400692 
Exome Variant ServerLOC400692
ExAC (Exome Aggregation Consortium)LOC400692 (select the gene name)
Genetic variants : HAPMAP400692
Genomic Variants (DGV)LOC400692 [DGVbeta]
DECIPHERLOC400692 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC400692 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC400692
DgiDB (Drug Gene Interaction Database)LOC400692
DoCM (Curated mutations)LOC400692 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC400692 (select a term)
intoGenLOC400692
Cancer3DLOC400692(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC400692
Genetic Testing Registry LOC400692
NextProtQ8N3U1 [Medical]
TSGene400692
GENETestsLOC400692
Target ValidationLOC400692
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease400692
BioCentury BCIQLOC400692
ClinGenLOC400692
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400692
Clinical trialLOC400692
Miscellaneous
canSAR (ICR)LOC400692 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC400692
EVEXLOC400692
GoPubMedLOC400692
iHOPLOC400692
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:22:49 CEST 2017

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