Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC400927-CSNK1E (LOC400927-CSNK1E readthrough)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 102800317
Atlas_Id 55053
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 38686697 and ends at 38794527 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC400927-CSNK1E  102800317  LOC400927-CSNK1E readthrough
Aliases
GeneCards (Weizmann)LOC400927-CSNK1E
Ensembl hg19 (Hinxton) [Gene_View]  chr22:38686697-38794527 [Contig_View]  LOC400927-CSNK1E [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:38686697-38794527 [Contig_View]  LOC400927-CSNK1E [Vega]
TCGA cBioPortalLOC400927-CSNK1E
AceView (NCBI)LOC400927-CSNK1E
Genatlas (Paris)LOC400927-CSNK1E
WikiGenes102800317
SOURCE (Princeton)LOC400927-CSNK1E
Genetics Home Reference (NIH)LOC400927-CSNK1E
Genomic and cartography
GoldenPath hg19 (UCSC)LOC400927-CSNK1E  -     chr22:38686697-38794527 -  22q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC400927-CSNK1E  -     22q13.1   [Description]    (hg38-Dec_2013)
EnsemblLOC400927-CSNK1E - 22q13.1 [CytoView hg19]  LOC400927-CSNK1E - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBILOC400927-CSNK1E [Mapview hg19]  LOC400927-CSNK1E [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092269 AK310303
RefSeq transcript (Entrez)NM_001289912
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)LOC400927-CSNK1E
Cluster EST : UnigeneHs.720223 [ NCBI ]
CGAP (NCI)Hs.720223
Gene ExpressionLOC400927-CSNK1E [ NCBI-GEO ]   LOC400927-CSNK1E [ EBI - ARRAY_EXPRESS ]   LOC400927-CSNK1E [ SEEK ]   LOC400927-CSNK1E [ MEM ]
Gene Expression Viewer (FireBrowse)LOC400927-CSNK1E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102800317
GTEX Portal (Tissue expression)LOC400927-CSNK1E
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49674   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP49674  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49674
Splice isoforms : SwissVarP49674
PhosPhoSitePlusP49674
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Conserved Domain (NCBI)LOC400927-CSNK1E
DMDM Disease mutations102800317
Blocks (Seattle)LOC400927-CSNK1E
PDB (SRS)4HNI    4HOK   
PDB (PDBSum)4HNI    4HOK   
PDB (IMB)4HNI    4HOK   
PDB (RSDB)4HNI    4HOK   
Structural Biology KnowledgeBase4HNI    4HOK   
SCOP (Structural Classification of Proteins)4HNI    4HOK   
CATH (Classification of proteins structures)4HNI    4HOK   
SuperfamilyP49674
Peptide AtlasP49674
Protein Interaction databases
DIP (DOE-UCLA)P49674
IntAct (EBI)P49674
BioGRIDLOC400927-CSNK1E
STRING (EMBL)LOC400927-CSNK1E
ZODIACLOC400927-CSNK1E
Ontologies - Pathways
QuickGOP49674
Ontology : AmiGOG2/M transition of mitotic cell cycle  protein kinase activity  protein kinase activity  protein serine/threonine kinase activity  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  nucleus  nucleoplasm  cytoplasm  cytosol  DNA repair  rRNA processing  protein phosphorylation  protein phosphorylation  endocytosis  signal transduction  regulation of cell shape  Wnt signaling pathway  peptidyl-serine phosphorylation  negative regulation of Wnt signaling pathway  intracellular ribonucleoprotein complex  negative regulation of protein binding  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  circadian regulation of gene expression  cellular protein localization  regulation of circadian rhythm  poly(A) RNA binding  dopaminergic neuron differentiation  positive regulation of canonical Wnt signaling pathway  regulation of cellular protein localization  positive regulation of non-canonical Wnt signaling pathway  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  protein kinase activity  protein kinase activity  protein serine/threonine kinase activity  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  nucleus  nucleoplasm  cytoplasm  cytosol  DNA repair  rRNA processing  protein phosphorylation  protein phosphorylation  endocytosis  signal transduction  regulation of cell shape  Wnt signaling pathway  peptidyl-serine phosphorylation  negative regulation of Wnt signaling pathway  intracellular ribonucleoprotein complex  negative regulation of protein binding  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  circadian regulation of gene expression  cellular protein localization  regulation of circadian rhythm  poly(A) RNA binding  dopaminergic neuron differentiation  positive regulation of canonical Wnt signaling pathway  regulation of cellular protein localization  positive regulation of non-canonical Wnt signaling pathway  
NDEx NetworkLOC400927-CSNK1E
Atlas of Cancer Signalling NetworkLOC400927-CSNK1E
Wikipedia pathwaysLOC400927-CSNK1E
Orthology - Evolution
OrthoDB102800317
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENP49674
HOGENOMP49674
Homologs : HomoloGeneLOC400927-CSNK1E
Homology/Alignments : Family Browser (UCSC)LOC400927-CSNK1E
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC400927-CSNK1E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC400927-CSNK1E
dbVarLOC400927-CSNK1E
ClinVarLOC400927-CSNK1E
1000_GenomesLOC400927-CSNK1E 
Exome Variant ServerLOC400927-CSNK1E
ExAC (Exome Aggregation Consortium)LOC400927-CSNK1E (select the gene name)
Genetic variants : HAPMAP102800317
Genomic Variants (DGV)LOC400927-CSNK1E [DGVbeta]
DECIPHER (Syndromes)22:38686697-38794527  
CONAN: Copy Number AnalysisLOC400927-CSNK1E 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC400927-CSNK1E
DgiDB (Drug Gene Interaction Database)LOC400927-CSNK1E
DoCM (Curated mutations)LOC400927-CSNK1E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC400927-CSNK1E (select a term)
intoGenLOC400927-CSNK1E
Cancer3DLOC400927-CSNK1E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC400927-CSNK1E
Genetic Testing Registry LOC400927-CSNK1E
NextProtP49674 [Medical]
TSGene102800317
GENETestsLOC400927-CSNK1E
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease102800317
BioCentury BCIQLOC400927-CSNK1E
ClinGenLOC400927-CSNK1E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102800317
Clinical trialLOC400927-CSNK1E
Miscellaneous
canSAR (ICR)LOC400927-CSNK1E (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC400927-CSNK1E
EVEXLOC400927-CSNK1E
GoPubMedLOC400927-CSNK1E
iHOPLOC400927-CSNK1E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:13:33 CET 2017

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