Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC400927 (TPTE and PTEN homologous inositol lipid phosphatase pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 400927
Atlas_Id 68150
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 38344665 and ends at 38398926 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC400927  400927  TPTE and PTEN homologous inositol lipid phosphatase pseudogene
Aliases
GeneCards (Weizmann)LOC400927
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:38344665-38398926 [Contig_View]  LOC400927 [Vega]
TCGA cBioPortalLOC400927
AceView (NCBI)LOC400927
Genatlas (Paris)LOC400927
WikiGenes400927
SOURCE (Princeton)LOC400927
Genetics Home Reference (NIH)LOC400927
Genomic and cartography
GoldenPath hg38 (UCSC)LOC400927  -     chr22:38344665-38398926 -  22q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC400927  -     22q13.1   [Description]    (hg19-Feb_2009)
EnsemblLOC400927 - 22q13.1 [CytoView hg19]  LOC400927 - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBILOC400927 [Mapview hg19]  LOC400927 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124064 AK307225 BI669165 CN357790
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC400927
Cluster EST : UnigeneHs.720223 [ NCBI ]
CGAP (NCI)Hs.720223
Gene ExpressionLOC400927 [ NCBI-GEO ]   LOC400927 [ EBI - ARRAY_EXPRESS ]   LOC400927 [ SEEK ]   LOC400927 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC400927 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)400927
GTEX Portal (Tissue expression)LOC400927
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC400927
DMDM Disease mutations400927
Blocks (Seattle)LOC400927
Protein Interaction databases
BioGRIDLOC400927
STRING (EMBL)LOC400927
ZODIACLOC400927
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease400927
BioCentury BCIQLOC400927
ClinGenLOC400927
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400927
Clinical trialLOC400927
Miscellaneous
canSAR (ICR)LOC400927 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC400927
EVEXLOC400927
GoPubMedLOC400927
iHOPLOC400927
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:22:52 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.