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LOC400943 (uncharacterized LOC400943)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 400943
Atlas_Id 43016
Location 2p25.1  [Link to chromosome band 2p25]
Location_base_pair Starts at 10003158 and ends at 10006030 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC400943  400943  uncharacterized LOC400943
Aliases
GeneCards (Weizmann)LOC400943
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:10003158-10006030 [Contig_View]  LOC400943 [Vega]
TCGA cBioPortalLOC400943
AceView (NCBI)LOC400943
Genatlas (Paris)LOC400943
WikiGenes400943
SOURCE (Princeton)LOC400943
Genetics Home Reference (NIH)LOC400943
Genomic and cartography
GoldenPath hg38 (UCSC)LOC400943  -     chr2:10003158-10006030 -  2p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC400943  -     2p25.1   [Description]    (hg19-Feb_2009)
EnsemblLOC400943 - 2p25.1 [CytoView hg19]  LOC400943 - 2p25.1 [CytoView hg38]
Mapping of homologs : NCBILOC400943 [Mapview hg19]  LOC400943 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY358123 AY358741
RefSeq transcript (Entrez)NM_207480
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC400943
Cluster EST : UnigeneHs.526504 [ NCBI ]
CGAP (NCI)Hs.526504
Gene ExpressionLOC400943 [ NCBI-GEO ]   LOC400943 [ EBI - ARRAY_EXPRESS ]   LOC400943 [ SEEK ]   LOC400943 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC400943 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400943
GTEX Portal (Tissue expression)LOC400943
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UY13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UY13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UY13
Splice isoforms : SwissVarQ6UY13
PhosPhoSitePlusQ6UY13
Domains : Interpro (EBI)Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC400943
DMDM Disease mutations400943
Blocks (Seattle)LOC400943
SuperfamilyQ6UY13
Peptide AtlasQ6UY13
HPRD15618
IPIIPI00432313   
Protein Interaction databases
DIP (DOE-UCLA)Q6UY13
IntAct (EBI)Q6UY13
BioGRIDLOC400943
STRING (EMBL)LOC400943
ZODIACLOC400943
Ontologies - Pathways
QuickGOQ6UY13
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkLOC400943
Atlas of Cancer Signalling NetworkLOC400943
Wikipedia pathwaysLOC400943
Orthology - Evolution
OrthoDB400943
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6UY13
HOGENOMQ6UY13
Homologs : HomoloGeneLOC400943
Homology/Alignments : Family Browser (UCSC)LOC400943
Gene fusions - Rearrangements
Tumor Fusion PortalLOC400943
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC400943 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC400943
dbVarLOC400943
ClinVarLOC400943
1000_GenomesLOC400943 
Exome Variant ServerLOC400943
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP400943
Genomic Variants (DGV)LOC400943 [DGVbeta]
DECIPHERLOC400943 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC400943 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC400943
DgiDB (Drug Gene Interaction Database)LOC400943
DoCM (Curated mutations)LOC400943 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC400943 (select a term)
intoGenLOC400943
Cancer3DLOC400943(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLOC400943
MedgenLOC400943
Genetic Testing Registry LOC400943
NextProtQ6UY13 [Medical]
TSGene400943
GENETestsLOC400943
Target ValidationLOC400943
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease400943
BioCentury BCIQLOC400943
ClinGenLOC400943
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400943
Clinical trialLOC400943
Miscellaneous
canSAR (ICR)LOC400943 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC400943
EVEXLOC400943
GoPubMedLOC400943
iHOPLOC400943
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:20:41 CET 2017

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