Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC401123 (uncharacterized LOC401123)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 401123
Atlas_Id 68163
Location 4p15.2  [Link to chromosome band 4p15]
Location_base_pair Starts at 27207505 and ends at 27218404 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC401123  401123  uncharacterized LOC401123
Aliases
GeneCards (Weizmann)LOC401123
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:27207505-27218404 [Contig_View]  LOC401123 [Vega]
TCGA cBioPortalLOC401123
AceView (NCBI)LOC401123
Genatlas (Paris)LOC401123
WikiGenes401123
SOURCE (Princeton)LOC401123
Genetics Home Reference (NIH)LOC401123
Genomic and cartography
GoldenPath hg38 (UCSC)LOC401123  -     chr4:27207505-27218404 -  4p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC401123  -     4p15.2   [Description]    (hg19-Feb_2009)
EnsemblLOC401123 - 4p15.2 [CytoView hg19]  LOC401123 - 4p15.2 [CytoView hg38]
Mapping of homologs : NCBILOC401123 [Mapview hg19]  LOC401123 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127623
RefSeq transcript (Entrez)NM_207490
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC401123
Cluster EST : UnigeneHs.429441 [ NCBI ]
CGAP (NCI)Hs.429441
Gene ExpressionLOC401123 [ NCBI-GEO ]   LOC401123 [ EBI - ARRAY_EXPRESS ]   LOC401123 [ SEEK ]   LOC401123 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC401123 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401123
GTEX Portal (Tissue expression)LOC401123
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZS92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZS92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZS92
Splice isoforms : SwissVarQ6ZS92
PhosPhoSitePlusQ6ZS92
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC401123
DMDM Disease mutations401123
Blocks (Seattle)LOC401123
SuperfamilyQ6ZS92
Peptide AtlasQ6ZS92
HPRD13512
IPIIPI00410554   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZS92
IntAct (EBI)Q6ZS92
BioGRIDLOC401123
STRING (EMBL)LOC401123
ZODIACLOC401123
Ontologies - Pathways
QuickGOQ6ZS92
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC401123
Atlas of Cancer Signalling NetworkLOC401123
Wikipedia pathwaysLOC401123
Orthology - Evolution
OrthoDB401123
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZS92
HOGENOMQ6ZS92
Homologs : HomoloGeneLOC401123
Homology/Alignments : Family Browser (UCSC)LOC401123
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC401123 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC401123
dbVarLOC401123
ClinVarLOC401123
1000_GenomesLOC401123 
Exome Variant ServerLOC401123
ExAC (Exome Aggregation Consortium)LOC401123 (select the gene name)
Genetic variants : HAPMAP401123
Genomic Variants (DGV)LOC401123 [DGVbeta]
DECIPHERLOC401123 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC401123 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC401123
DgiDB (Drug Gene Interaction Database)LOC401123
DoCM (Curated mutations)LOC401123 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC401123 (select a term)
intoGenLOC401123
Cancer3DLOC401123(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC401123
Genetic Testing Registry LOC401123
NextProtQ6ZS92 [Medical]
TSGene401123
GENETestsLOC401123
Target ValidationLOC401123
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease401123
BioCentury BCIQLOC401123
ClinGenLOC401123
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401123
Clinical trialLOC401123
Miscellaneous
canSAR (ICR)LOC401123 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC401123
EVEXLOC401123
GoPubMedLOC401123
iHOPLOC401123
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:22:55 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.