Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC401188 (uncharacterized LOC401188)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 401188
Atlas_Id 68168
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 57743610 and ends at 57751717 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC401188  401188  uncharacterized LOC401188
Aliases
GeneCards (Weizmann)LOC401188
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:57743610-57751717 [Contig_View]  LOC401188 [Vega]
TCGA cBioPortalLOC401188
AceView (NCBI)LOC401188
Genatlas (Paris)LOC401188
WikiGenes401188
SOURCE (Princeton)LOC401188
Genetics Home Reference (NIH)LOC401188
Genomic and cartography
GoldenPath hg38 (UCSC)LOC401188  -     chr5:57743610-57751717 +  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC401188  -     5q11.2   [Description]    (hg19-Feb_2009)
EnsemblLOC401188 - 5q11.2 [CytoView hg19]  LOC401188 - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBILOC401188 [Mapview hg19]  LOC401188 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091013
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC401188
Cluster EST : UnigeneHs.449289 [ NCBI ]
CGAP (NCI)Hs.449289
Gene ExpressionLOC401188 [ NCBI-GEO ]   LOC401188 [ EBI - ARRAY_EXPRESS ]   LOC401188 [ SEEK ]   LOC401188 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC401188 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)401188
GTEX Portal (Tissue expression)LOC401188
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC401188
DMDM Disease mutations401188
Blocks (Seattle)LOC401188
Protein Interaction databases
BioGRIDLOC401188
STRING (EMBL)LOC401188
ZODIACLOC401188
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease401188
BioCentury BCIQLOC401188
ClinGenLOC401188
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401188
Clinical trialLOC401188
Miscellaneous
canSAR (ICR)LOC401188 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC401188
EVEXLOC401188
GoPubMedLOC401188
iHOPLOC401188
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:56:58 CET 2017

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jlhuret@AtlasGeneticsOncology.org.