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LOC401286 (uncharacterized LOC401286)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 401286
Atlas_Id 68171
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 167666841 and ends at 167679223 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC401286  401286  uncharacterized LOC401286
Aliases
GeneCards (Weizmann)LOC401286
Ensembl hg19 (Hinxton)ENSG00000272549 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000272549 [Gene_View]  ENSG00000272549 [Sequence]  chr6:167666841-167679223 [Contig_View]  LOC401286 [Vega]
ICGC DataPortalENSG00000272549
TCGA cBioPortalLOC401286
AceView (NCBI)LOC401286
Genatlas (Paris)LOC401286
WikiGenes401286
SOURCE (Princeton)LOC401286
Genetics Home Reference (NIH)LOC401286
Genomic and cartography
GoldenPath hg38 (UCSC)LOC401286  -     chr6:167666841-167679223 -  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC401286  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblLOC401286 - 6q27 [CytoView hg19]  LOC401286 - 6q27 [CytoView hg38]
Mapping of homologs : NCBILOC401286 [Mapview hg19]  LOC401286 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123853 AK127120
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC401286
Cluster EST : UnigeneHs.487182 [ NCBI ]
CGAP (NCI)Hs.487182
Alternative Splicing GalleryENSG00000272549
Gene ExpressionLOC401286 [ NCBI-GEO ]   LOC401286 [ EBI - ARRAY_EXPRESS ]   LOC401286 [ SEEK ]   LOC401286 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC401286 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401286
GTEX Portal (Tissue expression)LOC401286
Human Protein AtlasENSG00000272549-LOC401286 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSV7
Splice isoforms : SwissVarQ6ZSV7
PhosPhoSitePlusQ6ZSV7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC401286
DMDM Disease mutations401286
Blocks (Seattle)LOC401286
SuperfamilyQ6ZSV7
Human Protein Atlas [tissue]ENSG00000272549-LOC401286 [tissue]
Peptide AtlasQ6ZSV7
HPRD18625
IPIIPI00401145   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSV7
IntAct (EBI)Q6ZSV7
FunCoupENSG00000272549
BioGRIDLOC401286
STRING (EMBL)LOC401286
ZODIACLOC401286
Ontologies - Pathways
QuickGOQ6ZSV7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC401286
Atlas of Cancer Signalling NetworkLOC401286
Wikipedia pathwaysLOC401286
Orthology - Evolution
OrthoDB401286
GeneTree (enSembl)ENSG00000272549
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZSV7
HOGENOMQ6ZSV7
Homologs : HomoloGeneLOC401286
Homology/Alignments : Family Browser (UCSC)LOC401286
Gene fusions - Rearrangements
Fusion : QuiverLOC401286
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC401286 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC401286
dbVarLOC401286
ClinVarLOC401286
1000_GenomesLOC401286 
Exome Variant ServerLOC401286
ExAC (Exome Aggregation Consortium)ENSG00000272549
GNOMAD BrowserENSG00000272549
Varsome BrowserLOC401286
Genetic variants : HAPMAP401286
Genomic Variants (DGV)LOC401286 [DGVbeta]
DECIPHERLOC401286 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC401286 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC401286
DgiDB (Drug Gene Interaction Database)LOC401286
DoCM (Curated mutations)LOC401286 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC401286 (select a term)
intoGenLOC401286
Cancer3DLOC401286(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLOC401286
MedgenLOC401286
Genetic Testing Registry LOC401286
NextProtQ6ZSV7 [Medical]
TSGene401286
GENETestsLOC401286
Target ValidationLOC401286
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease401286
BioCentury BCIQLOC401286
ClinGenLOC401286
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401286
Clinical trialLOC401286
Miscellaneous
canSAR (ICR)LOC401286 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC401286
EVEXLOC401286
GoPubMedLOC401286
iHOPLOC401286
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:09:55 CEST 2018

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