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LOC401357 (uncharacterized LOC401357)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 401357
Atlas_Id 68178
Location 7p11.2  [Link to chromosome band 7p11]
Location_base_pair Starts at 56809124 and ends at 56812736 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC401357  401357  uncharacterized LOC401357
Aliases
GeneCards (Weizmann)LOC401357
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:56809124-56812736 [Contig_View]  LOC401357 [Vega]
TCGA cBioPortalLOC401357
AceView (NCBI)LOC401357
Genatlas (Paris)LOC401357
WikiGenes401357
SOURCE (Princeton)LOC401357
Genetics Home Reference (NIH)LOC401357
Genomic and cartography
GoldenPath hg38 (UCSC)LOC401357  -     chr7:56809124-56812736 -  7p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC401357  -     7p11.2   [Description]    (hg19-Feb_2009)
EnsemblLOC401357 - 7p11.2 [CytoView hg19]  LOC401357 - 7p11.2 [CytoView hg38]
Mapping of homologs : NCBILOC401357 [Mapview hg19]  LOC401357 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125790 AK128114 BC137417 JX508854
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC401357
Cluster EST : UnigeneHs.457696 [ NCBI ]
CGAP (NCI)Hs.457696
Gene ExpressionLOC401357 [ NCBI-GEO ]   LOC401357 [ EBI - ARRAY_EXPRESS ]   LOC401357 [ SEEK ]   LOC401357 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC401357 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401357
GTEX Portal (Tissue expression)LOC401357
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRM9
Splice isoforms : SwissVarQ6ZRM9
PhosPhoSitePlusQ6ZRM9
Domains : Interpro (EBI)DUF4705   
Domain families : Pfam (Sanger)DUF4705 (PF15788)   
Domain families : Pfam (NCBI)pfam15788   
Conserved Domain (NCBI)LOC401357
DMDM Disease mutations401357
Blocks (Seattle)LOC401357
SuperfamilyQ6ZRM9
Peptide AtlasQ6ZRM9
HPRD18429
IPIIPI00418782   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRM9
IntAct (EBI)Q6ZRM9
BioGRIDLOC401357
STRING (EMBL)LOC401357
ZODIACLOC401357
Ontologies - Pathways
QuickGOQ6ZRM9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC401357
Atlas of Cancer Signalling NetworkLOC401357
Wikipedia pathwaysLOC401357
Orthology - Evolution
OrthoDB401357
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZRM9
HOGENOMQ6ZRM9
Homologs : HomoloGeneLOC401357
Homology/Alignments : Family Browser (UCSC)LOC401357
Gene fusions - Rearrangements
Fusion: Tumor Portal LOC401357
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC401357 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC401357
dbVarLOC401357
ClinVarLOC401357
1000_GenomesLOC401357 
Exome Variant ServerLOC401357
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP401357
Genomic Variants (DGV)LOC401357 [DGVbeta]
DECIPHERLOC401357 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC401357 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC401357
DgiDB (Drug Gene Interaction Database)LOC401357
DoCM (Curated mutations)LOC401357 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC401357 (select a term)
intoGenLOC401357
Cancer3DLOC401357(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC401357
Genetic Testing Registry LOC401357
NextProtQ6ZRM9 [Medical]
TSGene401357
GENETestsLOC401357
Target ValidationLOC401357
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease401357
BioCentury BCIQLOC401357
ClinGenLOC401357
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401357
Clinical trialLOC401357
Miscellaneous
canSAR (ICR)LOC401357 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC401357
EVEXLOC401357
GoPubMedLOC401357
iHOPLOC401357
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:10:06 CET 2017

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