Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC401589 (uncharacterized LOC401589)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 401589
Atlas_Id 68188
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 52199840 and ends at 52203235 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC401589  401589  uncharacterized LOC401589
Aliases
GeneCards (Weizmann)LOC401589
Ensembl hg19 (Hinxton)ENSG00000182776 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182776 [Gene_View]  chrX:52199840-52203235 [Contig_View]  LOC401589 [Vega]
ICGC DataPortalENSG00000182776
TCGA cBioPortalLOC401589
AceView (NCBI)LOC401589
Genatlas (Paris)LOC401589
WikiGenes401589
SOURCE (Princeton)LOC401589
Genetics Home Reference (NIH)LOC401589
Genomic and cartography
GoldenPath hg38 (UCSC)LOC401589  -     chrX:52199840-52203235 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC401589  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblLOC401589 - Xp11.22 [CytoView hg19]  LOC401589 - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBILOC401589 [Mapview hg19]  LOC401589 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096379 BC137157
RefSeq transcript (Entrez)NM_001013687
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC401589
Cluster EST : UnigeneHs.722862 [ NCBI ]
CGAP (NCI)Hs.722862
Alternative Splicing GalleryENSG00000182776
Gene ExpressionLOC401589 [ NCBI-GEO ]   LOC401589 [ EBI - ARRAY_EXPRESS ]   LOC401589 [ SEEK ]   LOC401589 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC401589 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401589
GTEX Portal (Tissue expression)LOC401589
Human Protein AtlasENSG00000182776-LOC401589 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8P6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8P6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8P6
Splice isoforms : SwissVarQ8N8P6
PhosPhoSitePlusQ8N8P6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC401589
DMDM Disease mutations401589
Blocks (Seattle)LOC401589
SuperfamilyQ8N8P6
Human Protein Atlas [tissue]ENSG00000182776-LOC401589 [tissue]
Peptide AtlasQ8N8P6
HPRD18430
IPIIPI00167523   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8P6
IntAct (EBI)Q8N8P6
FunCoupENSG00000182776
BioGRIDLOC401589
STRING (EMBL)LOC401589
ZODIACLOC401589
Ontologies - Pathways
QuickGOQ8N8P6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC401589
Atlas of Cancer Signalling NetworkLOC401589
Wikipedia pathwaysLOC401589
Orthology - Evolution
OrthoDB401589
GeneTree (enSembl)ENSG00000182776
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ8N8P6
HOGENOMQ8N8P6
Homologs : HomoloGeneLOC401589
Homology/Alignments : Family Browser (UCSC)LOC401589
Gene fusions - Rearrangements
Tumor Fusion PortalLOC401589
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC401589 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC401589
dbVarLOC401589
ClinVarLOC401589
1000_GenomesLOC401589 
Exome Variant ServerLOC401589
ExAC (Exome Aggregation Consortium)ENSG00000182776
GNOMAD BrowserENSG00000182776
Genetic variants : HAPMAP401589
Genomic Variants (DGV)LOC401589 [DGVbeta]
DECIPHERLOC401589 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC401589 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC401589
DgiDB (Drug Gene Interaction Database)LOC401589
DoCM (Curated mutations)LOC401589 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC401589 (select a term)
intoGenLOC401589
Cancer3DLOC401589(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLOC401589
MedgenLOC401589
Genetic Testing Registry LOC401589
NextProtQ8N8P6 [Medical]
TSGene401589
GENETestsLOC401589
Target ValidationLOC401589
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease401589
BioCentury BCIQLOC401589
ClinGenLOC401589
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401589
Clinical trialLOC401589
Miscellaneous
canSAR (ICR)LOC401589 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC401589
EVEXLOC401589
GoPubMedLOC401589
iHOPLOC401589
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:53:40 CET 2017

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