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LOC403312 (putative uncharacterized protein MGC39545)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 403312
Atlas_Id 68190
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 125495214 and ends at 125499526 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC403312  403312  putative uncharacterized protein MGC39545
Aliases
GeneCards (Weizmann)LOC403312
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:125495214-125499526 [Contig_View]  LOC403312 [Vega]
TCGA cBioPortalLOC403312
AceView (NCBI)LOC403312
Genatlas (Paris)LOC403312
WikiGenes403312
SOURCE (Princeton)LOC403312
Genetics Home Reference (NIH)LOC403312
Genomic and cartography
GoldenPath hg38 (UCSC)LOC403312  -     chr11:125495214-125499526 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC403312  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblLOC403312 - 11q24.2 [CytoView hg19]  LOC403312 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBILOC403312 [Mapview hg19]  LOC403312 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC036197
RefSeq transcript (Entrez)NM_001301851 NM_203452
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC403312
Cluster EST : UnigeneHs.450611 [ NCBI ]
CGAP (NCI)Hs.450611
Gene ExpressionLOC403312 [ NCBI-GEO ]   LOC403312 [ EBI - ARRAY_EXPRESS ]   LOC403312 [ SEEK ]   LOC403312 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC403312 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)403312
GTEX Portal (Tissue expression)LOC403312
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYB0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYB0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYB0
Splice isoforms : SwissVarQ8IYB0
PhosPhoSitePlusQ8IYB0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC403312
DMDM Disease mutations403312
Blocks (Seattle)LOC403312
SuperfamilyQ8IYB0
Peptide AtlasQ8IYB0
HPRD17540
IPIIPI00217747   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYB0
IntAct (EBI)Q8IYB0
BioGRIDLOC403312
STRING (EMBL)LOC403312
ZODIACLOC403312
Ontologies - Pathways
QuickGOQ8IYB0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC403312
Atlas of Cancer Signalling NetworkLOC403312
Wikipedia pathwaysLOC403312
Orthology - Evolution
OrthoDB403312
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ8IYB0
HOGENOMQ8IYB0
Homologs : HomoloGeneLOC403312
Homology/Alignments : Family Browser (UCSC)LOC403312
Gene fusions - Rearrangements
Tumor Fusion PortalLOC403312
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC403312 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC403312
dbVarLOC403312
ClinVarLOC403312
1000_GenomesLOC403312 
Exome Variant ServerLOC403312
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP403312
Genomic Variants (DGV)LOC403312 [DGVbeta]
DECIPHERLOC403312 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC403312 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC403312
DgiDB (Drug Gene Interaction Database)LOC403312
DoCM (Curated mutations)LOC403312 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC403312 (select a term)
intoGenLOC403312
Cancer3DLOC403312(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLOC403312
MedgenLOC403312
Genetic Testing Registry LOC403312
NextProtQ8IYB0 [Medical]
TSGene403312
GENETestsLOC403312
Target ValidationLOC403312
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease403312
BioCentury BCIQLOC403312
ClinGenLOC403312
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD403312
Clinical trialLOC403312
Miscellaneous
canSAR (ICR)LOC403312 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC403312
EVEXLOC403312
GoPubMedLOC403312
iHOPLOC403312
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:57:04 CET 2017

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