Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC439951 (uncharacterized LOC439951)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 439951
Atlas_Id 68196
Location 10p14  [Link to chromosome band 10p14]
Location_base_pair Starts at 11611304 and ends at 11612227 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC439951  439951  uncharacterized LOC439951
Aliases
GeneCards (Weizmann)LOC439951
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:11611304-11612227 [Contig_View]  LOC439951 [Vega]
TCGA cBioPortalLOC439951
AceView (NCBI)LOC439951
Genatlas (Paris)LOC439951
WikiGenes439951
SOURCE (Princeton)LOC439951
Genetics Home Reference (NIH)LOC439951
Genomic and cartography
GoldenPath hg38 (UCSC)LOC439951  -     chr10:11611304-11612227 +  10p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC439951  -     10p14   [Description]    (hg19-Feb_2009)
EnsemblLOC439951 - 10p14 [CytoView hg19]  LOC439951 - 10p14 [CytoView hg38]
Mapping of homologs : NCBILOC439951 [Mapview hg19]  LOC439951 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC037281
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC439951
Cluster EST : UnigeneHs.590986 [ NCBI ]
CGAP (NCI)Hs.590986
Gene ExpressionLOC439951 [ NCBI-GEO ]   LOC439951 [ EBI - ARRAY_EXPRESS ]   LOC439951 [ SEEK ]   LOC439951 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC439951 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)439951
GTEX Portal (Tissue expression)LOC439951
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDZ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDZ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDZ9
Splice isoforms : SwissVarQ8NDZ9
PhosPhoSitePlusQ8NDZ9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC439951
DMDM Disease mutations439951
Blocks (Seattle)LOC439951
SuperfamilyQ8NDZ9
Peptide AtlasQ8NDZ9
IPIIPI00168634   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDZ9
IntAct (EBI)Q8NDZ9
BioGRIDLOC439951
STRING (EMBL)LOC439951
ZODIACLOC439951
Ontologies - Pathways
QuickGOQ8NDZ9
Ontology : AmiGOextracellular space  
Ontology : EGO-EBIextracellular space  
NDEx NetworkLOC439951
Atlas of Cancer Signalling NetworkLOC439951
Wikipedia pathwaysLOC439951
Orthology - Evolution
OrthoDB439951
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ8NDZ9
HOGENOMQ8NDZ9
Homologs : HomoloGeneLOC439951
Homology/Alignments : Family Browser (UCSC)LOC439951
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC439951 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC439951
dbVarLOC439951
ClinVarLOC439951
1000_GenomesLOC439951 
Exome Variant ServerLOC439951
ExAC (Exome Aggregation Consortium)LOC439951 (select the gene name)
Genetic variants : HAPMAP439951
Genomic Variants (DGV)LOC439951 [DGVbeta]
DECIPHERLOC439951 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC439951 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLOC439951  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMD-
BioMutasearch LOC439951
DgiDB (Drug Gene Interaction Database)LOC439951
DoCM (Curated mutations)LOC439951 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC439951 (select a term)
intoGenLOC439951
Cancer3DLOC439951(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC439951
Genetic Testing Registry LOC439951
NextProtQ8NDZ9 [Medical]
TSGene439951
GENETestsLOC439951
Target ValidationLOC439951
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease439951
BioCentury BCIQLOC439951
ClinGenLOC439951
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD439951
Clinical trialLOC439951
Miscellaneous
canSAR (ICR)LOC439951 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC439951
EVEXLOC439951
GoPubMedLOC439951
iHOPLOC439951
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:23:04 CEST 2017

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