Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC440040 (glutamate metabotropic receptor 5 pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 440040
Atlas_Id 68200
Location 11p11.12  [Link to chromosome band 11p11]
Location_base_pair Starts at 49558528 and ends at 49810417 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC440040  440040  glutamate metabotropic receptor 5 pseudogene
Aliases
GeneCards (Weizmann)LOC440040
Ensembl hg19 (Hinxton)ENSG00000205035 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205035 [Gene_View]  chr11:49558528-49810417 [Contig_View]  LOC440040 [Vega]
ICGC DataPortalENSG00000205035
TCGA cBioPortalLOC440040
AceView (NCBI)LOC440040
Genatlas (Paris)LOC440040
WikiGenes440040
SOURCE (Princeton)LOC440040
Genetics Home Reference (NIH)LOC440040
Genomic and cartography
GoldenPath hg38 (UCSC)LOC440040  -     chr11:49558528-49810417 +  11p11.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC440040  -     11p11.12   [Description]    (hg19-Feb_2009)
EnsemblLOC440040 - 11p11.12 [CytoView hg19]  LOC440040 - 11p11.12 [CytoView hg38]
Mapping of homologs : NCBILOC440040 [Mapview hg19]  LOC440040 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK294678 BC141819 BC142657
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC440040
Cluster EST : UnigeneHs.655746 [ NCBI ]
CGAP (NCI)Hs.655746
Alternative Splicing GalleryENSG00000205035
Gene ExpressionLOC440040 [ NCBI-GEO ]   LOC440040 [ EBI - ARRAY_EXPRESS ]   LOC440040 [ SEEK ]   LOC440040 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC440040 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)440040
GTEX Portal (Tissue expression)LOC440040
Human Protein AtlasENSG00000205035-LOC440040 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC440040
DMDM Disease mutations440040
Blocks (Seattle)LOC440040
Human Protein Atlas [tissue]ENSG00000205035-LOC440040 [tissue]
IPIIPI00735970   
Protein Interaction databases
FunCoupENSG00000205035
BioGRIDLOC440040
STRING (EMBL)LOC440040
ZODIACLOC440040
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease440040
BioCentury BCIQLOC440040
ClinGenLOC440040
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440040
Clinical trialLOC440040
Miscellaneous
canSAR (ICR)LOC440040 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC440040
EVEXLOC440040
GoPubMedLOC440040
iHOPLOC440040
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:10:11 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.