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LOC440300 (chondroitin sulfate proteoglycan 4 pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 440300
Atlas_Id 68205
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 84191848 and ends at 84209273 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC440300  440300  chondroitin sulfate proteoglycan 4 pseudogene
Aliases
GeneCards (Weizmann)LOC440300
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:84191848-84209273 [Contig_View]  LOC440300 [Vega]
TCGA cBioPortalLOC440300
AceView (NCBI)LOC440300
Genatlas (Paris)LOC440300
WikiGenes440300
SOURCE (Princeton)LOC440300
Genetics Home Reference (NIH)LOC440300
Genomic and cartography
GoldenPath hg38 (UCSC)LOC440300  -     chr15:84191848-84209273 +  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC440300  -     15q25.2   [Description]    (hg19-Feb_2009)
EnsemblLOC440300 - 15q25.2 [CytoView hg19]  LOC440300 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBILOC440300 [Mapview hg19]  LOC440300 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX648930
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC440300
Cluster EST : UnigeneHs.546565 [ NCBI ]
CGAP (NCI)Hs.546565
Gene ExpressionLOC440300 [ NCBI-GEO ]   LOC440300 [ EBI - ARRAY_EXPRESS ]   LOC440300 [ SEEK ]   LOC440300 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC440300 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)440300
GTEX Portal (Tissue expression)LOC440300
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC440300
DMDM Disease mutations440300
Blocks (Seattle)LOC440300
Protein Interaction databases
BioGRIDLOC440300
STRING (EMBL)LOC440300
ZODIACLOC440300
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease440300
BioCentury BCIQLOC440300
ClinGenLOC440300
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440300
Clinical trialLOC440300
Miscellaneous
canSAR (ICR)LOC440300 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC440300
EVEXLOC440300
GoPubMedLOC440300
iHOPLOC440300
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:57:07 CET 2017

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