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LOC440896 (uncharacterized LOC440896)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 440896
Atlas_Id 68224
Location 9p11.2  [Link to chromosome band 9p11]
Location_base_pair Starts at 41100985 and ends at 41107812 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC440896  440896  uncharacterized LOC440896
Aliases
GeneCards (Weizmann)LOC440896
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:41100985-41107812 [Contig_View]  LOC440896 [Vega]
TCGA cBioPortalLOC440896
AceView (NCBI)LOC440896
Genatlas (Paris)LOC440896
WikiGenes440896
SOURCE (Princeton)LOC440896
Genetics Home Reference (NIH)LOC440896
Genomic and cartography
GoldenPath hg38 (UCSC)LOC440896  -     chr9:41100985-41107812 -  9p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC440896  -     9p11.2   [Description]    (hg19-Feb_2009)
EnsemblLOC440896 - 9p11.2 [CytoView hg19]  LOC440896 - 9p11.2 [CytoView hg38]
Mapping of homologs : NCBILOC440896 [Mapview hg19]  LOC440896 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055091 AK127288 AY343903 BC032955 BC036611
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC440896
Cluster EST : UnigeneHs.643596 [ NCBI ]
CGAP (NCI)Hs.643596
Gene ExpressionLOC440896 [ NCBI-GEO ]   LOC440896 [ EBI - ARRAY_EXPRESS ]   LOC440896 [ SEEK ]   LOC440896 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC440896 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440896
GTEX Portal (Tissue expression)LOC440896
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSN1
Splice isoforms : SwissVarQ6ZSN1
PhosPhoSitePlusQ6ZSN1
Domains : Interpro (EBI)DUF4575   
Domain families : Pfam (Sanger)DUF4575 (PF15143)   
Domain families : Pfam (NCBI)pfam15143   
Conserved Domain (NCBI)LOC440896
DMDM Disease mutations440896
Blocks (Seattle)LOC440896
SuperfamilyQ6ZSN1
Peptide AtlasQ6ZSN1
IPIIPI00444565   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSN1
IntAct (EBI)Q6ZSN1
BioGRIDLOC440896
STRING (EMBL)LOC440896
ZODIACLOC440896
Ontologies - Pathways
QuickGOQ6ZSN1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC440896
Atlas of Cancer Signalling NetworkLOC440896
Wikipedia pathwaysLOC440896
Orthology - Evolution
OrthoDB440896
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZSN1
HOGENOMQ6ZSN1
Homologs : HomoloGeneLOC440896
Homology/Alignments : Family Browser (UCSC)LOC440896
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC440896 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC440896
dbVarLOC440896
ClinVarLOC440896
1000_GenomesLOC440896 
Exome Variant ServerLOC440896
ExAC (Exome Aggregation Consortium)LOC440896 (select the gene name)
Genetic variants : HAPMAP440896
Genomic Variants (DGV)LOC440896 [DGVbeta]
DECIPHERLOC440896 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC440896 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC440896
DgiDB (Drug Gene Interaction Database)LOC440896
DoCM (Curated mutations)LOC440896 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC440896 (select a term)
intoGenLOC440896
Cancer3DLOC440896(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC440896
Genetic Testing Registry LOC440896
NextProtQ6ZSN1 [Medical]
TSGene440896
GENETestsLOC440896
Target ValidationLOC440896
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease440896
BioCentury BCIQLOC440896
ClinGenLOC440896
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440896
Clinical trialLOC440896
Miscellaneous
canSAR (ICR)LOC440896 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC440896
EVEXLOC440896
GoPubMedLOC440896
iHOPLOC440896
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:25:29 CEST 2017

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