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LOC554223 (histocompatibility antigen-related)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 554223
Atlas_Id 68267
Location 6_GL000256v2_alt  [Link to chromosome band 6]
Location_base_pair Starts at 1098374 and ends at 1103038 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC554223  554223  histocompatibility antigen-related
Aliases
GeneCards (Weizmann)LOC554223
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr6_GL000256v2_alt:1098374-1103038 [Contig_View]  LOC554223 [Vega]
TCGA cBioPortalLOC554223
AceView (NCBI)LOC554223
Genatlas (Paris)LOC554223
WikiGenes554223
SOURCE (Princeton)LOC554223
Genetics Home Reference (NIH)LOC554223
Genomic and cartography
GoldenPath hg38 (UCSC)LOC554223  -     chr6_GL000256v2_alt:1098374-1103038 +  6_GL000256v2_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC554223  -     6_GL000256v2_alt   [Description]    (hg19-Feb_2009)
EnsemblLOC554223 - 6_GL000256v2_alt [CytoView hg19]  LOC554223 - 6_GL000256v2_alt [CytoView hg38]
Mapping of homologs : NCBILOC554223 [Mapview hg19]  LOC554223 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128290 AK310256 BC051362 BC068238
RefSeq transcript (Entrez)NM_001207043
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)LOC554223
Cluster EST : UnigeneHs.722872 [ NCBI ]
CGAP (NCI)Hs.722872
Gene ExpressionLOC554223 [ NCBI-GEO ]   LOC554223 [ EBI - ARRAY_EXPRESS ]   LOC554223 [ SEEK ]   LOC554223 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC554223 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)554223
GTEX Portal (Tissue expression)LOC554223
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC554223
DMDM Disease mutations554223
Blocks (Seattle)LOC554223
IPIIPI00871879   IPI00384279   
Protein Interaction databases
BioGRIDLOC554223
STRING (EMBL)LOC554223
ZODIACLOC554223
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease554223
BioCentury BCIQLOC554223
ClinGenLOC554223
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD554223
Clinical trialLOC554223
Miscellaneous
canSAR (ICR)LOC554223 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC554223
EVEXLOC554223
GoPubMedLOC554223
iHOPLOC554223
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:25:35 CEST 2017

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