Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC554249 (uncharacterized LOC554249)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 554249
Atlas_Id 68268
Location 9p12  [Link to chromosome band 9p12]
Location_base_pair Starts at 42018875 and ends at 42020413 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC554249  554249  uncharacterized LOC554249
Aliases
GeneCards (Weizmann)LOC554249
Ensembl hg19 (Hinxton) [Gene_View]  chr9:42018875-42020413 [Contig_View]  LOC554249 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:42018875-42020413 [Contig_View]  LOC554249 [Vega]
TCGA cBioPortalLOC554249
AceView (NCBI)LOC554249
Genatlas (Paris)LOC554249
WikiGenes554249
SOURCE (Princeton)LOC554249
Genetics Home Reference (NIH)LOC554249
Genomic and cartography
GoldenPath hg19 (UCSC)LOC554249  -     chr9:42018875-42020413 +  9p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC554249  -     9p12   [Description]    (hg38-Dec_2013)
EnsemblLOC554249 - 9p12 [CytoView hg19]  LOC554249 - 9p12 [CytoView hg38]
Mapping of homologs : NCBILOC554249 [Mapview hg19]  LOC554249 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC084570
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000009 NT_008413
Consensus coding sequences : CCDS (NCBI)LOC554249
Cluster EST : UnigeneHs.721511 [ NCBI ]
CGAP (NCI)Hs.721511
Gene ExpressionLOC554249 [ NCBI-GEO ]   LOC554249 [ EBI - ARRAY_EXPRESS ]   LOC554249 [ SEEK ]   LOC554249 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC554249 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)554249
GTEX Portal (Tissue expression)LOC554249
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5XG85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5XG85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5XG85
Splice isoforms : SwissVarQ5XG85
PhosPhoSitePlusQ5XG85
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC554249
DMDM Disease mutations554249
Blocks (Seattle)LOC554249
SuperfamilyQ5XG85
Peptide AtlasQ5XG85
IPIIPI00844328   
Protein Interaction databases
DIP (DOE-UCLA)Q5XG85
IntAct (EBI)Q5XG85
BioGRIDLOC554249
STRING (EMBL)LOC554249
ZODIACLOC554249
Ontologies - Pathways
QuickGOQ5XG85
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkLOC554249
Atlas of Cancer Signalling NetworkLOC554249
Wikipedia pathwaysLOC554249
Orthology - Evolution
OrthoDB554249
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ5XG85
HOGENOMQ5XG85
Homologs : HomoloGeneLOC554249
Homology/Alignments : Family Browser (UCSC)LOC554249
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC554249 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC554249
dbVarLOC554249
ClinVarLOC554249
1000_GenomesLOC554249 
Exome Variant ServerLOC554249
ExAC (Exome Aggregation Consortium)LOC554249 (select the gene name)
Genetic variants : HAPMAP554249
Genomic Variants (DGV)LOC554249 [DGVbeta]
DECIPHER (Syndromes)9:42018875-42020413  
CONAN: Copy Number AnalysisLOC554249 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC554249
DgiDB (Drug Gene Interaction Database)LOC554249
DoCM (Curated mutations)LOC554249 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC554249 (select a term)
intoGenLOC554249
Cancer3DLOC554249(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC554249
Genetic Testing Registry LOC554249
NextProtQ5XG85 [Medical]
TSGene554249
GENETestsLOC554249
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease554249
BioCentury BCIQLOC554249
ClinGenLOC554249
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD554249
Clinical trialLOC554249
Miscellaneous
canSAR (ICR)LOC554249 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC554249
EVEXLOC554249
GoPubMedLOC554249
iHOPLOC554249
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:25:48 CET 2017

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