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LOC613038 (SAGA complex associated factor 29 pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 613038
Atlas_Id 68273
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29464968 and ends at 29467578 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC613038  613038  SAGA complex associated factor 29 pseudogene
Aliases
GeneCards (Weizmann)LOC613038
Ensembl hg19 (Hinxton)ENSG00000258130 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258130 [Gene_View]  chr16:29464968-29467578 [Contig_View]  LOC613038 [Vega]
ICGC DataPortalENSG00000258130
TCGA cBioPortalLOC613038
AceView (NCBI)LOC613038
Genatlas (Paris)LOC613038
WikiGenes613038
SOURCE (Princeton)LOC613038
Genetics Home Reference (NIH)LOC613038
Genomic and cartography
GoldenPath hg38 (UCSC)LOC613038  -     chr16:29464968-29467578 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC613038  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblLOC613038 - 16p11.2 [CytoView hg19]  LOC613038 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBILOC613038 [Mapview hg19]  LOC613038 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW136592
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC613038
Cluster EST : UnigeneHs.569585 [ NCBI ]
CGAP (NCI)Hs.569585
Alternative Splicing GalleryENSG00000258130
Gene ExpressionLOC613038 [ NCBI-GEO ]   LOC613038 [ EBI - ARRAY_EXPRESS ]   LOC613038 [ SEEK ]   LOC613038 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC613038 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)613038
GTEX Portal (Tissue expression)LOC613038
Human Protein AtlasENSG00000258130-LOC613038 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC613038
DMDM Disease mutations613038
Blocks (Seattle)LOC613038
Human Protein Atlas [tissue]ENSG00000258130-LOC613038 [tissue]
Protein Interaction databases
FunCoupENSG00000258130
BioGRIDLOC613038
STRING (EMBL)LOC613038
ZODIACLOC613038
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease613038
BioCentury BCIQLOC613038
ClinGenLOC613038
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD613038
Clinical trialLOC613038
Miscellaneous
canSAR (ICR)LOC613038 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC613038
EVEXLOC613038
GoPubMedLOC613038
iHOPLOC613038
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:57:21 CET 2017

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