Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC642422 (uncharacterized LOC642422)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 642422
Atlas_Id 68285
Location 10p15.3  [Link to chromosome band 10p15]
Location_base_pair Starts at 1337732 and ends at 1340326 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC642422  642422  uncharacterized LOC642422
Aliases
GeneCards (Weizmann)LOC642422
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:1337732-1340326 [Contig_View]  LOC642422 [Vega]
TCGA cBioPortalLOC642422
AceView (NCBI)LOC642422
Genatlas (Paris)LOC642422
WikiGenes642422
SOURCE (Princeton)LOC642422
Genetics Home Reference (NIH)LOC642422
Genomic and cartography
GoldenPath hg38 (UCSC)LOC642422  -     chr10:1337732-1340326 -  10p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC642422  -     10p15.3   [Description]    (hg19-Feb_2009)
EnsemblLOC642422 - 10p15.3 [CytoView hg19]  LOC642422 - 10p15.3 [CytoView hg38]
Mapping of homologs : NCBILOC642422 [Mapview hg19]  LOC642422 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125752
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC642422
Gene ExpressionLOC642422 [ NCBI-GEO ]   LOC642422 [ EBI - ARRAY_EXPRESS ]   LOC642422 [ SEEK ]   LOC642422 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC642422 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)642422
GTEX Portal (Tissue expression)LOC642422
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC642422
DMDM Disease mutations642422
Blocks (Seattle)LOC642422
IPIIPI00445587   
Protein Interaction databases
BioGRIDLOC642422
STRING (EMBL)LOC642422
ZODIACLOC642422
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease642422
BioCentury BCIQLOC642422
ClinGenLOC642422
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642422
Clinical trialLOC642422
Miscellaneous
canSAR (ICR)LOC642422 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC642422
EVEXLOC642422
GoPubMedLOC642422
iHOPLOC642422
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:57:24 CET 2017

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jlhuret@AtlasGeneticsOncology.org.