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LOC642579 (tripartite motif containing 64B pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 642579
Atlas_Id 76565
Location 11q14.3  [Link to chromosome band 11q14]
Location_base_pair Starts at 90018034 and ends at 90024266 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC642579  642579  tripartite motif containing 64B pseudogene
Aliases
GeneCards (Weizmann)LOC642579
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:90018034-90024266 [Contig_View]  LOC642579 [Vega]
TCGA cBioPortalLOC642579
AceView (NCBI)LOC642579
Genatlas (Paris)LOC642579
WikiGenes642579
SOURCE (Princeton)LOC642579
Genetics Home Reference (NIH)LOC642579
Genomic and cartography
GoldenPath hg38 (UCSC)LOC642579  -     chr11:90018034-90024266 -  11q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC642579  -     11q14.3   [Description]    (hg19-Feb_2009)
EnsemblLOC642579 - 11q14.3 [CytoView hg19]  LOC642579 - 11q14.3 [CytoView hg38]
Mapping of homologs : NCBILOC642579 [Mapview hg19]  LOC642579 [Mapview hg38]
Gene and transcription
Genbank (Entrez)JF968460
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC642579
Cluster EST : UnigeneHs.589046 [ NCBI ]
CGAP (NCI)Hs.589046
Gene ExpressionLOC642579 [ NCBI-GEO ]   LOC642579 [ EBI - ARRAY_EXPRESS ]   LOC642579 [ SEEK ]   LOC642579 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC642579 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)642579
GTEX Portal (Tissue expression)LOC642579
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC642579
DMDM Disease mutations642579
Blocks (Seattle)LOC642579
Protein Interaction databases
BioGRIDLOC642579
STRING (EMBL)LOC642579
ZODIACLOC642579
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease642579
BioCentury BCIQLOC642579
ClinGenLOC642579
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642579
Clinical trialLOC642579
Miscellaneous
canSAR (ICR)LOC642579 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC642579
EVEXLOC642579
GoPubMedLOC642579
iHOPLOC642579
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:10:29 CET 2017

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