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LOC642696 (uncharacterized LOC642696)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 642696
Atlas_Id 68291
Location 16p13.13  [Link to chromosome band 16p13]
Location_base_pair Starts at 12086746 and ends at 12090302 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC642696  642696  uncharacterized LOC642696
Aliases
GeneCards (Weizmann)LOC642696
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:12086746-12090302 [Contig_View]  LOC642696 [Vega]
TCGA cBioPortalLOC642696
AceView (NCBI)LOC642696
Genatlas (Paris)LOC642696
WikiGenes642696
SOURCE (Princeton)LOC642696
Genetics Home Reference (NIH)LOC642696
Genomic and cartography
GoldenPath hg38 (UCSC)LOC642696  -     chr16:12086746-12090302 -  16p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC642696  -     16p13.13   [Description]    (hg19-Feb_2009)
EnsemblLOC642696 - 16p13.13 [CytoView hg19]  LOC642696 - 16p13.13 [CytoView hg38]
Mapping of homologs : NCBILOC642696 [Mapview hg19]  LOC642696 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057352
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC642696
Cluster EST : UnigeneHs.617179 [ NCBI ]
CGAP (NCI)Hs.617179
Gene ExpressionLOC642696 [ NCBI-GEO ]   LOC642696 [ EBI - ARRAY_EXPRESS ]   LOC642696 [ SEEK ]   LOC642696 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC642696 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642696
GTEX Portal (Tissue expression)LOC642696
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M66   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M66  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M66
Splice isoforms : SwissVarQ96M66
PhosPhoSitePlusQ96M66
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC642696
DMDM Disease mutations642696
Blocks (Seattle)LOC642696
SuperfamilyQ96M66
Peptide AtlasQ96M66
IPIIPI00748866   
Protein Interaction databases
DIP (DOE-UCLA)Q96M66
IntAct (EBI)Q96M66
BioGRIDLOC642696
STRING (EMBL)LOC642696
ZODIACLOC642696
Ontologies - Pathways
QuickGOQ96M66
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC642696
Atlas of Cancer Signalling NetworkLOC642696
Wikipedia pathwaysLOC642696
Orthology - Evolution
OrthoDB642696
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ96M66
HOGENOMQ96M66
Homologs : HomoloGeneLOC642696
Homology/Alignments : Family Browser (UCSC)LOC642696
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC642696 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC642696
dbVarLOC642696
ClinVarLOC642696
1000_GenomesLOC642696 
Exome Variant ServerLOC642696
ExAC (Exome Aggregation Consortium)LOC642696 (select the gene name)
Genetic variants : HAPMAP642696
Genomic Variants (DGV)LOC642696 [DGVbeta]
DECIPHERLOC642696 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC642696 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC642696
DgiDB (Drug Gene Interaction Database)LOC642696
DoCM (Curated mutations)LOC642696 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC642696 (select a term)
intoGenLOC642696
Cancer3DLOC642696(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC642696
Genetic Testing Registry LOC642696
NextProtQ96M66 [Medical]
TSGene642696
GENETestsLOC642696
Target ValidationLOC642696
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease642696
BioCentury BCIQLOC642696
ClinGenLOC642696
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642696
Clinical trialLOC642696
Miscellaneous
canSAR (ICR)LOC642696 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC642696
EVEXLOC642696
GoPubMedLOC642696
iHOPLOC642696
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:23:30 CEST 2017

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