Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC642776 (uncharacterized LOC642776)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 642776
Atlas_Id 68292
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 115033604 and ends at 115085444 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC642776  642776  uncharacterized LOC642776
Aliases
GeneCards (Weizmann)LOC642776
Ensembl hg19 (Hinxton)ENSG00000235244 [Gene_View]  chrX:115033604-115085444 [Contig_View]  LOC642776 [Vega]
Ensembl hg38 (Hinxton)ENSG00000235244 [Gene_View]  chrX:115033604-115085444 [Contig_View]  LOC642776 [Vega]
ICGC DataPortalENSG00000235244
TCGA cBioPortalLOC642776
AceView (NCBI)LOC642776
Genatlas (Paris)LOC642776
WikiGenes642776
SOURCE (Princeton)LOC642776
Genetics Home Reference (NIH)LOC642776
Genomic and cartography
GoldenPath hg19 (UCSC)LOC642776  -     chrX:115033604-115085444 -  Xq23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC642776  -     Xq23   [Description]    (hg38-Dec_2013)
EnsemblLOC642776 - Xq23 [CytoView hg19]  LOC642776 - Xq23 [CytoView hg38]
Mapping of homologs : NCBILOC642776 [Mapview hg19]  LOC642776 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC003645 BX642309
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_028405 NW_004929445
Consensus coding sequences : CCDS (NCBI)LOC642776
Cluster EST : UnigeneHs.634316 [ NCBI ]
CGAP (NCI)Hs.634316
Alternative Splicing GalleryENSG00000235244
Gene ExpressionLOC642776 [ NCBI-GEO ]   LOC642776 [ EBI - ARRAY_EXPRESS ]   LOC642776 [ SEEK ]   LOC642776 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC642776 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642776
GTEX Portal (Tissue expression)LOC642776
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTK2
Splice isoforms : SwissVarQ9BTK2
PhosPhoSitePlusQ9BTK2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC642776
DMDM Disease mutations642776
Blocks (Seattle)LOC642776
SuperfamilyQ9BTK2
Human Protein AtlasENSG00000235244
Peptide AtlasQ9BTK2
IPIIPI00186192   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTK2
IntAct (EBI)Q9BTK2
FunCoupENSG00000235244
BioGRIDLOC642776
STRING (EMBL)LOC642776
ZODIACLOC642776
Ontologies - Pathways
QuickGOQ9BTK2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC642776
Atlas of Cancer Signalling NetworkLOC642776
Wikipedia pathwaysLOC642776
Orthology - Evolution
OrthoDB642776
GeneTree (enSembl)ENSG00000235244
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ9BTK2
HOGENOMQ9BTK2
Homologs : HomoloGeneLOC642776
Homology/Alignments : Family Browser (UCSC)LOC642776
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC642776 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC642776
dbVarLOC642776
ClinVarLOC642776
1000_GenomesLOC642776 
Exome Variant ServerLOC642776
ExAC (Exome Aggregation Consortium)LOC642776 (select the gene name)
Genetic variants : HAPMAP642776
Genomic Variants (DGV)LOC642776 [DGVbeta]
DECIPHER (Syndromes)X:115033604-115085444  ENSG00000235244
CONAN: Copy Number AnalysisLOC642776 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC642776
DgiDB (Drug Gene Interaction Database)LOC642776
DoCM (Curated mutations)LOC642776 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC642776 (select a term)
intoGenLOC642776
Cancer3DLOC642776(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC642776
Genetic Testing Registry LOC642776
NextProtQ9BTK2 [Medical]
TSGene642776
GENETestsLOC642776
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease642776
BioCentury BCIQLOC642776
ClinGenLOC642776
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642776
Clinical trialLOC642776
Miscellaneous
canSAR (ICR)LOC642776 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC642776
EVEXLOC642776
GoPubMedLOC642776
iHOPLOC642776
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:25:55 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.