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LOC643549 (uncharacterized LOC643549)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 643549
Atlas_Id 68311
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 44559189 and ends at 44563694 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC643549  643549  uncharacterized LOC643549
Aliases
GeneCards (Weizmann)LOC643549
Ensembl hg19 (Hinxton) [Gene_View]  chr20:44559189-44563694 [Contig_View]  LOC643549 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:44559189-44563694 [Contig_View]  LOC643549 [Vega]
TCGA cBioPortalLOC643549
AceView (NCBI)LOC643549
Genatlas (Paris)LOC643549
WikiGenes643549
SOURCE (Princeton)LOC643549
Genetics Home Reference (NIH)LOC643549
Genomic and cartography
GoldenPath hg19 (UCSC)LOC643549  -     chr20:44559189-44563694 -  20q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC643549  -     20q13.12   [Description]    (hg38-Dec_2013)
EnsemblLOC643549 - 20q13.12 [CytoView hg19]  LOC643549 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBILOC643549 [Mapview hg19]  LOC643549 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097925 BC133006 BC133008
RefSeq transcript (Entrez)NM_001039897
RefSeq genomic (Entrez)AC_000152 NC_000020 NT_011362 NW_001838666
Consensus coding sequences : CCDS (NCBI)LOC643549
Cluster EST : UnigeneHs.472856 [ NCBI ]
CGAP (NCI)Hs.472856
Gene ExpressionLOC643549 [ NCBI-GEO ]   LOC643549 [ EBI - ARRAY_EXPRESS ]   LOC643549 [ SEEK ]   LOC643549 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC643549 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643549
GTEX Portal (Tissue expression)LOC643549
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C880   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C880  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C880
Splice isoforms : SwissVarP0C880
PhosPhoSitePlusP0C880
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC643549
DMDM Disease mutations643549
Blocks (Seattle)LOC643549
SuperfamilyP0C880
Peptide AtlasP0C880
IPIIPI00166180   
Protein Interaction databases
DIP (DOE-UCLA)P0C880
IntAct (EBI)P0C880
BioGRIDLOC643549
STRING (EMBL)LOC643549
ZODIACLOC643549
Ontologies - Pathways
QuickGOP0C880
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC643549
Atlas of Cancer Signalling NetworkLOC643549
Wikipedia pathwaysLOC643549
Orthology - Evolution
OrthoDB643549
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENP0C880
HOGENOMP0C880
Homologs : HomoloGeneLOC643549
Homology/Alignments : Family Browser (UCSC)LOC643549
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC643549 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC643549
dbVarLOC643549
ClinVarLOC643549
1000_GenomesLOC643549 
Exome Variant ServerLOC643549
ExAC (Exome Aggregation Consortium)LOC643549 (select the gene name)
Genetic variants : HAPMAP643549
Genomic Variants (DGV)LOC643549 [DGVbeta]
DECIPHER (Syndromes)20:44559189-44563694  
CONAN: Copy Number AnalysisLOC643549 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC643549
DgiDB (Drug Gene Interaction Database)LOC643549
DoCM (Curated mutations)LOC643549 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC643549 (select a term)
intoGenLOC643549
Cancer3DLOC643549(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC643549
Genetic Testing Registry LOC643549
NextProtP0C880 [Medical]
TSGene643549
GENETestsLOC643549
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease643549
BioCentury BCIQLOC643549
ClinGenLOC643549
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643549
Clinical trialLOC643549
Miscellaneous
canSAR (ICR)LOC643549 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC643549
EVEXLOC643549
GoPubMedLOC643549
iHOPLOC643549
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:25:59 CET 2017

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