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LOC643936 (uncharacterized LOC643936)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 643936
Atlas_Id 68320
Location 6p24.3  [Link to chromosome band 6p24]
Location_base_pair Starts at 7104130 and ends at 7108741 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC643936  643936  uncharacterized LOC643936
Aliases
GeneCards (Weizmann)LOC643936
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:7104130-7108741 [Contig_View]  LOC643936 [Vega]
TCGA cBioPortalLOC643936
AceView (NCBI)LOC643936
Genatlas (Paris)LOC643936
WikiGenes643936
SOURCE (Princeton)LOC643936
Genetics Home Reference (NIH)LOC643936
Genomic and cartography
GoldenPath hg38 (UCSC)LOC643936  -     chr6:7104130-7108741 -  6p24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC643936  -     6p24.3   [Description]    (hg19-Feb_2009)
EnsemblLOC643936 - 6p24.3 [CytoView hg19]  LOC643936 - 6p24.3 [CytoView hg38]
Mapping of homologs : NCBILOC643936 [Mapview hg19]  LOC643936 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127740
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC643936
Gene ExpressionLOC643936 [ NCBI-GEO ]   LOC643936 [ EBI - ARRAY_EXPRESS ]   LOC643936 [ SEEK ]   LOC643936 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC643936 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643936
GTEX Portal (Tissue expression)LOC643936
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZS46   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZS46  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZS46
Splice isoforms : SwissVarQ6ZS46
PhosPhoSitePlusQ6ZS46
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC643936
DMDM Disease mutations643936
Blocks (Seattle)LOC643936
SuperfamilyQ6ZS46
Peptide AtlasQ6ZS46
IPIIPI00444115   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZS46
IntAct (EBI)Q6ZS46
BioGRIDLOC643936
STRING (EMBL)LOC643936
ZODIACLOC643936
Ontologies - Pathways
QuickGOQ6ZS46
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC643936
Atlas of Cancer Signalling NetworkLOC643936
Wikipedia pathwaysLOC643936
Orthology - Evolution
OrthoDB643936
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ6ZS46
HOGENOMQ6ZS46
Homologs : HomoloGeneLOC643936
Homology/Alignments : Family Browser (UCSC)LOC643936
Gene fusions - Rearrangements
Fusion : QuiverLOC643936
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC643936 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC643936
dbVarLOC643936
ClinVarLOC643936
1000_GenomesLOC643936 
Exome Variant ServerLOC643936
Varsome BrowserLOC643936
Genetic variants : HAPMAP643936
Genomic Variants (DGV)LOC643936 [DGVbeta]
DECIPHERLOC643936 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC643936 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC643936
DgiDB (Drug Gene Interaction Database)LOC643936
DoCM (Curated mutations)LOC643936 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC643936 (select a term)
intoGenLOC643936
Cancer3DLOC643936(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLOC643936
MedgenLOC643936
Genetic Testing Registry LOC643936
NextProtQ6ZS46 [Medical]
TSGene643936
GENETestsLOC643936
Target ValidationLOC643936
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease643936
BioCentury BCIQLOC643936
ClinGenLOC643936
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643936
Clinical trialLOC643936
Miscellaneous
canSAR (ICR)LOC643936 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC643936
EVEXLOC643936
GoPubMedLOC643936
iHOPLOC643936
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:10:34 CEST 2018

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