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LOC645166 (lymphocyte-specific protein 1 pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 645166
Atlas_Id 68344
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 143399971 and ends at 143422592 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC645166  645166  lymphocyte-specific protein 1 pseudogene
Aliases
GeneCards (Weizmann)LOC645166
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:143399971-143422592 [Contig_View]  LOC645166 [Vega]
TCGA cBioPortalLOC645166
AceView (NCBI)LOC645166
Genatlas (Paris)LOC645166
WikiGenes645166
SOURCE (Princeton)LOC645166
Genetics Home Reference (NIH)LOC645166
Genomic and cartography
GoldenPath hg38 (UCSC)LOC645166  -     chr1:143399971-143422592 -  1q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC645166  -     1q21.1   [Description]    (hg19-Feb_2009)
EnsemblLOC645166 - 1q21.1 [CytoView hg19]  LOC645166 - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBILOC645166 [Mapview hg19]  LOC645166 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI087158 AK311729 AW954772 BE814857 BG716766
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC645166
Cluster EST : UnigeneHs.744183 [ NCBI ]
CGAP (NCI)Hs.744183
Gene ExpressionLOC645166 [ NCBI-GEO ]   LOC645166 [ EBI - ARRAY_EXPRESS ]   LOC645166 [ SEEK ]   LOC645166 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC645166 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)645166
GTEX Portal (Tissue expression)LOC645166
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC645166
DMDM Disease mutations645166
Blocks (Seattle)LOC645166
IPIIPI00921554   
Protein Interaction databases
BioGRIDLOC645166
STRING (EMBL)LOC645166
ZODIACLOC645166
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease645166
BioCentury BCIQLOC645166
ClinGenLOC645166
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645166
Clinical trialLOC645166
Miscellaneous
canSAR (ICR)LOC645166 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC645166
EVEXLOC645166
GoPubMedLOC645166
iHOPLOC645166
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:10:41 CET 2017

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