Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC645188 (uncharacterized LOC645188)

Identity

Alias (NCBI)SPANX-L
HGNC (Hugo) -
LocusID (NCBI) 645188
Atlas_Id 68345
Location Xq27.2  [Link to chromosome band Xq27]
Location_base_pair Starts at 141625864 and ends at 141626731 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC645188    uncharacterized LOC645188
AliasesSPANX-L
GeneCards (Weizmann)LOC645188
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chrX:141625864-141626731 [Contig_View]  LOC645188 [Vega]
TCGA cBioPortalLOC645188
AceView (NCBI)LOC645188
Genatlas (Paris)LOC645188
SOURCE (Princeton)LOC645188
Genetics Home Reference (NIH)LOC645188
Genomic and cartography
GoldenPath hg38 (UCSC)LOC645188  -     chrX:141625864-141626731 +  Xq27.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC645188  -     Xq27.2   [Description]    (hg19-Feb_2009)
GoldenPathLOC645188 - Xq27.2 [CytoView hg19]  LOC645188 - Xq27.2 [CytoView hg38]
Genome Data Viewer NCBILOC645188 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC042039 BG773166
RefSeq transcript (Entrez)NM_001318917
Consensus coding sequences : CCDS (NCBI)LOC645188
Gene ExpressionLOC645188 [ NCBI-GEO ]   LOC645188 [ EBI - ARRAY_EXPRESS ]   LOC645188 [ SEEK ]   LOC645188 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC645188 [ Firebrowse - Broad ]
GenevisibleExpression of LOC645188 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645188
GTEX Portal (Tissue expression)LOC645188
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC645188
Protein Interaction databases
BioGRIDLOC645188
STRING (EMBL)LOC645188
ZODIACLOC645188
Ontologies - Pathways
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLOC645188
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jan 20 13:35:22 CET 2022

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