Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC647859 (occludin pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 647859
Atlas_Id 68387
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 71074203 and ends at 71093070 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC647859  647859  occludin pseudogene
Aliases
GeneCards (Weizmann)LOC647859
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:71074203-71093070 [Contig_View]  LOC647859 [Vega]
TCGA cBioPortalLOC647859
AceView (NCBI)LOC647859
Genatlas (Paris)LOC647859
WikiGenes647859
SOURCE (Princeton)LOC647859
Genetics Home Reference (NIH)LOC647859
Genomic and cartography
GoldenPath hg38 (UCSC)LOC647859  -     chr5:71074203-71093070 -  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC647859  -     5q13.2   [Description]    (hg19-Feb_2009)
EnsemblLOC647859 - 5q13.2 [CytoView hg19]  LOC647859 - 5q13.2 [CytoView hg38]
Mapping of homologs : NCBILOC647859 [Mapview hg19]  LOC647859 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DC407815
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC647859
Cluster EST : UnigeneHs.671081 [ NCBI ]
CGAP (NCI)Hs.671081
Gene ExpressionLOC647859 [ NCBI-GEO ]   LOC647859 [ EBI - ARRAY_EXPRESS ]   LOC647859 [ SEEK ]   LOC647859 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC647859 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)647859
GTEX Portal (Tissue expression)LOC647859
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC647859
DMDM Disease mutations647859
Blocks (Seattle)LOC647859
Protein Interaction databases
BioGRIDLOC647859
STRING (EMBL)LOC647859
ZODIACLOC647859
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease647859
BioCentury BCIQLOC647859
ClinGenLOC647859
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD647859
Clinical trialLOC647859
Miscellaneous
canSAR (ICR)LOC647859 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC647859
EVEXLOC647859
GoPubMedLOC647859
iHOPLOC647859
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:25:56 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.