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LOC653160 (uncharacterized LOC653160)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 653160
Atlas_Id 68405
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 34975699 and ends at 34978706 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC653160  653160  uncharacterized LOC653160
Aliases
GeneCards (Weizmann)LOC653160
Ensembl hg19 (Hinxton)ENSG00000241014 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241014 [Gene_View]  chr1:34975699-34978706 [Contig_View]  LOC653160 [Vega]
ICGC DataPortalENSG00000241014
TCGA cBioPortalLOC653160
AceView (NCBI)LOC653160
Genatlas (Paris)LOC653160
WikiGenes653160
SOURCE (Princeton)LOC653160
Genetics Home Reference (NIH)LOC653160
Genomic and cartography
GoldenPath hg38 (UCSC)LOC653160  -     chr1:34975699-34978706 -  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC653160  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblLOC653160 - 1p34.3 [CytoView hg19]  LOC653160 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBILOC653160 [Mapview hg19]  LOC653160 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF085941 BC021230
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC653160
Cluster EST : UnigeneHs.737217 [ NCBI ]
CGAP (NCI)Hs.737217
Alternative Splicing GalleryENSG00000241014
Gene ExpressionLOC653160 [ NCBI-GEO ]   LOC653160 [ EBI - ARRAY_EXPRESS ]   LOC653160 [ SEEK ]   LOC653160 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC653160 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653160
GTEX Portal (Tissue expression)LOC653160
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L0L9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L0L9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L0L9
Splice isoforms : SwissVarQ7L0L9
PhosPhoSitePlusQ7L0L9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC653160
DMDM Disease mutations653160
Blocks (Seattle)LOC653160
SuperfamilyQ7L0L9
Human Protein AtlasENSG00000241014
Peptide AtlasQ7L0L9
IPIIPI00737793   
Protein Interaction databases
DIP (DOE-UCLA)Q7L0L9
IntAct (EBI)Q7L0L9
FunCoupENSG00000241014
BioGRIDLOC653160
STRING (EMBL)LOC653160
ZODIACLOC653160
Ontologies - Pathways
QuickGOQ7L0L9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLOC653160
Atlas of Cancer Signalling NetworkLOC653160
Wikipedia pathwaysLOC653160
Orthology - Evolution
OrthoDB653160
GeneTree (enSembl)ENSG00000241014
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ7L0L9
HOGENOMQ7L0L9
Homologs : HomoloGeneLOC653160
Homology/Alignments : Family Browser (UCSC)LOC653160
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC653160 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC653160
dbVarLOC653160
ClinVarLOC653160
1000_GenomesLOC653160 
Exome Variant ServerLOC653160
ExAC (Exome Aggregation Consortium)LOC653160 (select the gene name)
Genetic variants : HAPMAP653160
Genomic Variants (DGV)LOC653160 [DGVbeta]
DECIPHERLOC653160 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLOC653160 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC653160
DgiDB (Drug Gene Interaction Database)LOC653160
DoCM (Curated mutations)LOC653160 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC653160 (select a term)
intoGenLOC653160
Cancer3DLOC653160(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC653160
Genetic Testing Registry LOC653160
NextProtQ7L0L9 [Medical]
TSGene653160
GENETestsLOC653160
Target ValidationLOC653160
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease653160
BioCentury BCIQLOC653160
ClinGenLOC653160
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653160
Clinical trialLOC653160
Miscellaneous
canSAR (ICR)LOC653160 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC653160
EVEXLOC653160
GoPubMedLOC653160
iHOPLOC653160
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:25:58 CEST 2017

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