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LOC654780 (splicing factor proline/glutamine-rich)

Identity

Other aliasSFPQ
HGNC (Hugo) -
LocusID (NCBI) 654780
Atlas_Id 78646
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 84192558 and ends at 84197053 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC654780  654780  splicing factor proline/glutamine-rich
AliasesSFPQ
GeneCards (Weizmann)LOC654780
Ensembl hg19 (Hinxton)ENSG00000250685 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250685 [Gene_View]  ENSG00000250685 [Sequence]  chr16:84192558-84197053 [Contig_View]  LOC654780 [Vega]
ICGC DataPortalENSG00000250685
TCGA cBioPortalLOC654780
AceView (NCBI)LOC654780
Genatlas (Paris)LOC654780
WikiGenes654780
SOURCE (Princeton)LOC654780
Genetics Home Reference (NIH)LOC654780
Genomic and cartography
GoldenPath hg38 (UCSC)LOC654780  -     chr16:84192558-84197053 -  16q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC654780  -     16q24.1   [Description]    (hg19-Feb_2009)
EnsemblLOC654780 - 16q24.1 [CytoView hg19]  LOC654780 - 16q24.1 [CytoView hg38]
Mapping of homologs : NCBILOC654780 [Mapview hg19]  LOC654780 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095331 AK123582 DQ323994
RefSeq transcript (Entrez)NM_001039504
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC654780
Cluster EST : UnigeneHs.614079 [ NCBI ]
CGAP (NCI)Hs.614079
Alternative Splicing GalleryENSG00000250685
Gene ExpressionLOC654780 [ NCBI-GEO ]   LOC654780 [ EBI - ARRAY_EXPRESS ]   LOC654780 [ SEEK ]   LOC654780 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC654780 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)654780
GTEX Portal (Tissue expression)LOC654780
Human Protein AtlasENSG00000250685-LOC654780 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC654780
DMDM Disease mutations654780
Blocks (Seattle)LOC654780
Human Protein Atlas [tissue]ENSG00000250685-LOC654780 [tissue]
IPIIPI00166212   
Protein Interaction databases
FunCoupENSG00000250685
BioGRIDLOC654780
STRING (EMBL)LOC654780
ZODIACLOC654780
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease654780
BioCentury BCIQLOC654780
ClinGenLOC654780
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD654780
Clinical trialLOC654780
Miscellaneous
canSAR (ICR)LOC654780 (select the gene name)
DataMed IndexLOC654780
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC654780
EVEXLOC654780
GoPubMedLOC654780
iHOPLOC654780
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Feb 14 15:39:19 CET 2019

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