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LOC81691 (exonuclease NEF-sp)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 81691
Atlas_Id 68537
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 20817767 and ends at 20860990 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC81691  81691  exonuclease NEF-sp
Aliases
GeneCards (Weizmann)LOC81691
Ensembl hg19 (Hinxton)ENSG00000005189 [Gene_View]  chr16:20817767-20860990 [Contig_View]  LOC81691 [Vega]
Ensembl hg38 (Hinxton)ENSG00000005189 [Gene_View]  chr16:20817767-20860990 [Contig_View]  LOC81691 [Vega]
ICGC DataPortalENSG00000005189
TCGA cBioPortalLOC81691
AceView (NCBI)LOC81691
Genatlas (Paris)LOC81691
WikiGenes81691
SOURCE (Princeton)LOC81691
Genetics Home Reference (NIH)LOC81691
Genomic and cartography
GoldenPath hg19 (UCSC)LOC81691  -     chr16:20817767-20860990 +  16p12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC81691  -     16p12.3   [Description]    (hg38-Dec_2013)
EnsemblLOC81691 - 16p12.3 [CytoView hg19]  LOC81691 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBILOC81691 [Mapview hg19]  LOC81691 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF332193 AK314458 AL136763 AL162035 AM392845
RefSeq transcript (Entrez)NM_001144924 NM_001199053 NM_030941
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)LOC81691
Cluster EST : UnigeneHs.177926 [ NCBI ]
CGAP (NCI)Hs.177926
Alternative Splicing GalleryENSG00000005189
Gene ExpressionLOC81691 [ NCBI-GEO ]   LOC81691 [ EBI - ARRAY_EXPRESS ]   LOC81691 [ SEEK ]   LOC81691 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC81691 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81691
GTEX Portal (Tissue expression)LOC81691
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IC2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IC2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IC2
Splice isoforms : SwissVarQ96IC2
PhosPhoSitePlusQ96IC2
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Exonuclease    Exonuclease_RNaseT/DNA_pol3    Nucleotide-bd_a/b_plait    RNaseH-like_dom    RRM_dom   
Domain families : Pfam (Sanger)RNase_T (PF00929)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00929    pfam00076   
Domain families : Smart (EMBL)EXOIII (SM00479)  RRM (SM00360)  
Conserved Domain (NCBI)LOC81691
DMDM Disease mutations81691
Blocks (Seattle)LOC81691
SuperfamilyQ96IC2
Human Protein AtlasENSG00000005189
Peptide AtlasQ96IC2
HPRD17433
IPIIPI00307029   IPI00021754   
Protein Interaction databases
DIP (DOE-UCLA)Q96IC2
IntAct (EBI)Q96IC2
FunCoupENSG00000005189
BioGRIDLOC81691
STRING (EMBL)LOC81691
ZODIACLOC81691
Ontologies - Pathways
QuickGOQ96IC2
Ontology : AmiGOnucleotide binding  RNA binding  exonuclease activity  nucleolus  extracellular exosome  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBInucleotide binding  RNA binding  exonuclease activity  nucleolus  extracellular exosome  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkLOC81691
Atlas of Cancer Signalling NetworkLOC81691
Wikipedia pathwaysLOC81691
Orthology - Evolution
OrthoDB81691
GeneTree (enSembl)ENSG00000005189
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ96IC2
HOGENOMQ96IC2
Homologs : HomoloGeneLOC81691
Homology/Alignments : Family Browser (UCSC)LOC81691
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC81691 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC81691
dbVarLOC81691
ClinVarLOC81691
1000_GenomesLOC81691 
Exome Variant ServerLOC81691
ExAC (Exome Aggregation Consortium)LOC81691 (select the gene name)
Genetic variants : HAPMAP81691
Genomic Variants (DGV)LOC81691 [DGVbeta]
DECIPHER (Syndromes)16:20817767-20860990  ENSG00000005189
CONAN: Copy Number AnalysisLOC81691 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLOC81691  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMD-
BioMutasearch LOC81691
DgiDB (Drug Gene Interaction Database)LOC81691
DoCM (Curated mutations)LOC81691 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC81691 (select a term)
intoGenLOC81691
Cancer3DLOC81691(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC81691
Genetic Testing Registry LOC81691
NextProtQ96IC2 [Medical]
TSGene81691
GENETestsLOC81691
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease81691
BioCentury BCIQLOC81691
ClinGenLOC81691
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81691
Clinical trialLOC81691
Miscellaneous
canSAR (ICR)LOC81691 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC81691
EVEXLOC81691
GoPubMedLOC81691
iHOPLOC81691
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:26:49 CET 2017

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