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LOC84843 (uncharacterized LOC84843)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 84843
Atlas_Id 68539
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 31725010 and ends at 31726174 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC84843  84843  uncharacterized LOC84843
Aliases
GeneCards (Weizmann)LOC84843
Ensembl hg19 (Hinxton) [Gene_View]  chr22:31725010-31726174 [Contig_View]  LOC84843 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:31725010-31726174 [Contig_View]  LOC84843 [Vega]
TCGA cBioPortalLOC84843
AceView (NCBI)LOC84843
Genatlas (Paris)LOC84843
WikiGenes84843
SOURCE (Princeton)LOC84843
Genetics Home Reference (NIH)LOC84843
Genomic and cartography
GoldenPath hg19 (UCSC)LOC84843  -     chr22:31725010-31726174 +  22q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LOC84843  -     22q12.2   [Description]    (hg38-Dec_2013)
EnsemblLOC84843 - 22q12.2 [CytoView hg19]  LOC84843 - 22q12.2 [CytoView hg38]
Mapping of homologs : NCBILOC84843 [Mapview hg19]  LOC84843 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC007304
RefSeq transcript (Entrez)NM_032757
RefSeq genomic (Entrez)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838745 NW_004078112
Consensus coding sequences : CCDS (NCBI)LOC84843
Cluster EST : UnigeneHs.652898 [ NCBI ]
CGAP (NCI)Hs.652898
Gene ExpressionLOC84843 [ NCBI-GEO ]   LOC84843 [ EBI - ARRAY_EXPRESS ]   LOC84843 [ SEEK ]   LOC84843 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC84843 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84843
GTEX Portal (Tissue expression)LOC84843
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IR3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IR3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IR3
Splice isoforms : SwissVarQ96IR3
PhosPhoSitePlusQ96IR3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC84843
DMDM Disease mutations84843
Blocks (Seattle)LOC84843
SuperfamilyQ96IR3
Peptide AtlasQ96IR3
IPIIPI00063758   
Protein Interaction databases
DIP (DOE-UCLA)Q96IR3
IntAct (EBI)Q96IR3
BioGRIDLOC84843
STRING (EMBL)LOC84843
ZODIACLOC84843
Ontologies - Pathways
QuickGOQ96IR3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLOC84843
Atlas of Cancer Signalling NetworkLOC84843
Wikipedia pathwaysLOC84843
Orthology - Evolution
OrthoDB84843
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ96IR3
HOGENOMQ96IR3
Homologs : HomoloGeneLOC84843
Homology/Alignments : Family Browser (UCSC)LOC84843
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLOC84843 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LOC84843
dbVarLOC84843
ClinVarLOC84843
1000_GenomesLOC84843 
Exome Variant ServerLOC84843
ExAC (Exome Aggregation Consortium)LOC84843 (select the gene name)
Genetic variants : HAPMAP84843
Genomic Variants (DGV)LOC84843 [DGVbeta]
DECIPHER (Syndromes)22:31725010-31726174  
CONAN: Copy Number AnalysisLOC84843 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch LOC84843
DgiDB (Drug Gene Interaction Database)LOC84843
DoCM (Curated mutations)LOC84843 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LOC84843 (select a term)
intoGenLOC84843
Cancer3DLOC84843(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLOC84843
Genetic Testing Registry LOC84843
NextProtQ96IR3 [Medical]
TSGene84843
GENETestsLOC84843
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease84843
BioCentury BCIQLOC84843
ClinGenLOC84843
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84843
Clinical trialLOC84843
Miscellaneous
canSAR (ICR)LOC84843 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC84843
EVEXLOC84843
GoPubMedLOC84843
iHOPLOC84843
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:26:50 CET 2017

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